LOC111196691


Basic Information

Item Value
gene id LOC111196691
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019170901.1
NCBI id APWO02000499.1
chromosome length 310558
location 89563 ~ 94700 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022686060.1
ttatcttaatggAAGGATAGAGTTCACGGGAGGGAGCTTGAacttgtgtgtataaatgtctcTGAAAGCAaaggggaagtgtgtgtgtgtgtgtaataaagtgaaATGGAGAAACAGTCATGGGGAAAGACTGAAAGTTCAGTAGAGGTAAAGAAGAACATCCTGAAAGCGTCTGAGAGAGTTACGAAACACCGCAACCACTTTCAGATGGTCTCTGAAGTCGGCAGAAGCAGCGGTACGAAGAAAACTACTAGAAACATGACCAGATTTCTGCATGTCATCATCTGTTTCCTCACAGGCAGAGCACTGGCAGATGTGATCAGTCTGGAGGCTCGTGTTGGAGGAGATGTTCAGATCAGGTGTTCTCACGGCTTTGCCCACAAAAACGTGAAGTACTTCTGCAACAAGACGTGTTTAAATCGGGACGTTCTCATTAAAAGTGATCGAATGCGTAATCCAAACAGGAAGGGGAGGTATACGTTATTGGATGAAGGTTCAGGAGTCTTCACCGTGACCATCTCTGGTTTGAAAAAGTCAGACTCTGGGACTTACTGGTGTGGAGTTCAAAGAATGGTTAAAGACACGTATCTACAGGTGATTCTAACAGTACTGGAAGCTCCAGCAACCACGTCATATACCCAGTACCCAACAGCCAGTCACCCAGGAAACAGCCCATCTGATGCATCAGTAAAAAGTACTGAATCACGGACAGAGTCAGAAACATCTTCCACCATCACGGGGGACTTCTTCACAACCACAGATACAACAAACCCTgaaacacctgaaaacaaaCAGCTTGTTTACATCGGCTCTGGTCTGGCCTGTTTGGTGCTGATTTCTGCCATCTGTCTTTTAATTCtgataaaacaaactaaaaaacgCAAATCTGAAAAACACAAAGCTGAGAagGCTCAGATCgactgtaataataaacacagcaaACCAGAGAAGGACCTTCAAATCCCCATGAAAACCAATCAGCAGAAAACCCCTGAATcctcctcagccaatcagagcacacCTCCCATTAAGAACCCTCACCCAGACCCCAGTTCTTCTATATACTCCAACATTACTCCACACTCTGAAGACGCTCTAAATTACTCCACAGTGAACTTTACCCGTCAGTCTGAGGACATCCATTACTCCAGCGTTATCTTCATCAGAGAGAGCGACGCCCACAATACCCACCTCGACTCGTCTCCAGTAGAAACAGCAGGACCTTCAGTCTCGCTCTACTCTACTGTGATTCCTGCAGACAGTTCACACTCTGCTAAAAACACTACTGCAGTTATATATTCCACTATAGGGAAAGAAAGCTAGAGCTTAAAGCTAATCCACCTGACCCACTGTCACACCTTGCTTACAGGTGAGGGTAGTTGTGCCGCAAAAAGGTAGTGGGGTTgttgaaaaataacaaaaattatgGCAAACCACAGTAGCACATCTAGTGCAAGTTATTTTATTAGGTGAAAGGTGCAACAAAAAATAAGGTAGTCaacaaagcaaaagaaaaagaaaaagaaaaaaaagaggggtCCCCTTTAGGACGTAGAGCCCTCTCACAACAGCGTAAATCGTTCCGGGACAAACCAAGACACCGGTAAAAGTTGGATCCATATGTGATTTCTCAAGAAATGTGCAGTTATATTGCAGCGGCaaattttttaagagtttttgagcattcccgtaatgtcaaatacACATTGAATCCTAGGTTGTGCTATAGGgccaatgaaatacgtatatatgaaatttaaatttaagatcAAAGAACAGCATAAGTAAATAAGGCCTGTAAAATTTTGTAAGTTTATCCATtgtaacctcctcaaacacctaccaacaccaaaacatattcacttcctgttttaa

Function

GO:

id name namespace
GO:0031667 response to nutrient levels biological_process
GO:0009991 response to extracellular stimulus biological_process
GO:0004982 N-formyl peptide receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022686060.1 True 1875 mRNA 0.43 6 89563 94700

Neighbor

gene id symbol gene type direction distance location
LOC103027463 NA coding upstream 4752 76891 ~ 84811 (+)
LOC111196684 NA coding downstream 1007 95707 ~ 102694 (+)
LOC111196693 NA coding downstream 11502 106202 ~ 113408 (+)
LOC111196685 NA coding downstream 26300 121000 ~ 130341 (+)
LOC111196686 NA coding downstream 61346 156046 ~ 161475 (+)
LOC103028511 NA coding downstream 67908 162608 ~ 177778 (+)
G235490 NA non-coding upstream 159 76417 ~ 89404 (+)
G235498 NA non-coding downstream 48900 143600 ~ 154653 (+)
G235508 NA non-coding downstream 49647 144347 ~ 145195 (+)
G235513 LOC108271652 non-coding downstream 66215 160915 ~ 167623 (+)
G235510 NA non-coding downstream 82238 176938 ~ 202618 (+)
LOC111196695 LOC108271652 non-coding downstream 100695 195395 ~ 198841 (+)
LOC103028116 NA other upstream 66994 20689 ~ 22569 (+)
LOC111196687 NA other downstream 98161 192861 ~ 194963 (+)

Expression


Co-expression Network