Gene
RNA
| Item | Value |
|---|---|
| gene id | G75272 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000012 |
| NCBI id | null |
| chromosome length | 13770000 |
| location | 10138297 ~ 10140069 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| description |
|---|
| PREDICTED: zinc finger CCCH domain-containing protein 7B |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU85852 | True | 1682 | lncRNA | 0.48 | 2 | 10138297 | 10140069 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000012_09977219_09983804 | NA | coding | upstream | 154431 | 9977011 ~ 9983866 (+) |
| CI01000012_09828421_09828926 | NA | coding | upstream | 308909 | 9828421 ~ 9829388 (+) |
| CI01000012_09815706_09822346 | CHATA, CHAT | coding | upstream | 315626 | 9815706 ~ 9822671 (+) |
| CI01000012_09812937_09814478 | SLC18A3, SLC18A3A | coding | upstream | 322880 | 9812421 ~ 9815417 (+) |
| CI01000012_09796386_09801947 | RGR, RGRA | coding | upstream | 335753 | 9796291 ~ 9802544 (+) |
| CI01000012_10196272_10198737 | HPS6 | coding | downstream | 56203 | 10196272 ~ 10198816 (+) |
| CI01000012_10223957_10235955 | NA | coding | downstream | 83628 | 10223697 ~ 10236276 (+) |
| CI01000012_10244843_10249396 | NA | coding | downstream | 104774 | 10244843 ~ 10249499 (+) |
| CI01000012_10260457_10272063 | NT5C2B, NT5C2, NT5C2A | coding | downstream | 119666 | 10259735 ~ 10272262 (+) |
| CI01000012_10296725_10299883 | CYP17, CYP17A1 | coding | downstream | 156559 | 10296628 ~ 10301555 (+) |
| G75311 | NA | non-coding | upstream | 44127 | 10093847 ~ 10094170 (+) |
| G75258 | NA | non-coding | upstream | 74605 | 10063382 ~ 10063692 (+) |
| G75148 | NA | non-coding | upstream | 150573 | 9987365 ~ 9987724 (+) |
| G75147 | NA | non-coding | upstream | 151927 | 9986112 ~ 9986370 (+) |
| G75115 | NA | non-coding | upstream | 206421 | 9931534 ~ 9931876 (+) |
| G75277 | NA | non-coding | downstream | 52920 | 10192989 ~ 10193998 (+) |
| G75339 | NA | non-coding | downstream | 74493 | 10214562 ~ 10214804 (+) |
| G75340 | NA | non-coding | downstream | 74847 | 10214916 ~ 10215219 (+) |
| G75276 | NA | non-coding | downstream | 134596 | 10274665 ~ 10277003 (+) |
| G75349 | NA | non-coding | downstream | 153144 | 10293213 ~ 10293445 (+) |
| G73578 | NA | other | upstream | 1770670 | 8366806 ~ 8367627 (+) |
| CI01000012_07806089_07811902 | BEND3 | other | upstream | 2330442 | 7805248 ~ 7811902 (+) |
| CI01000012_05923216_05928055 | SRD5A2B | other | upstream | 4213992 | 5922385 ~ 5929186 (+) |
| G71623 | NA | other | upstream | 4321692 | 5813517 ~ 5816605 (+) |
| G71548 | NA | other | upstream | 4576864 | 5550493 ~ 5561433 (+) |
| G75533 | NA | other | downstream | 1004748 | 11144817 ~ 11145739 (+) |
| G76385 | NA | other | downstream | 2490686 | 12630755 ~ 12675666 (+) |
| G76374 | NA | other | downstream | 2605462 | 12745531 ~ 12749169 (+) |
| CI01000012_13029637_13033226 | RGS17 | other | downstream | 2875437 | 13029435 ~ 13038899 (+) |
