G75276


Basic Information

Item Value
gene id G75276
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 10274665 ~ 10277003 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU85856
AAACAGTTTTATTATAGCAATTTCCATCTGCATTATATATATATAATATGTATATTTAAATCTGATATAGCATTGTCTGGTTTATATTATGTAAGCATACAATAGTACTCTCTGATTTATGACTGTACAGTATCTCTATACACATTCAAGATTGAAAATAGCAGCAGTGTATGACAGACTCAAACCGCATGTTAGAGCACCACATTTTTTGAAGACATTTCCTCTTTTCTAAGGCAGGCGATCAAATGTGAAAACACTGATCTGACCTGTAGGACATCACCAAATGCTTTAAGTGAAATGAAAGGGCGTTCCTCATTAACACAGTGTGAACAAACTGGAATAAGCAGTCAATGTAACAGAAGAACAGGAATGAAGCCTTTGTTAGTGTTCAACAATCACTACTTCACATCTCAAGCCCCTTAACAGTAGTTATGTTAATCTAACAAACTTATTCTACCTCTCAGCCTCTTATTAAATTCTGATAGTTTACTTTCAGTTATTTTGTCCTACCAGTAAGCTCATTAATTGGTCATGATTGTCCCTGCATAGCTGTTGCACTATTGCACTGAGAGGTTGCTACATAAAACACTTAAGACGTAAATGTCCTGATATCCAGCGGCTTTACACTTCTGACAGAAGCGTCTCAGGAGGTTCTGATTAAAAAAAAAAAAAAAAAAACAGCGGATAAAAACATCAGCCAGAGAAACGTTCCCCTTTGTGTCAAGAGCGTTAGTGTAATCTTGTCATAATAAAACCAAAATAAATACATTAATGCTGAATTATTTTCCTTTTTCATCTGTTTTAAAATCGATAAATCATTACAAGTACCTCTTTTACAATCCCATGGCATTGAGTCCTACATGAATAGCTTTTTTTCTAAAAATAATAAACGTAAGATAAAAGATCAAATATGGAATCTGAAGATGAGATATAGTTACAGTGTAAGTTCCTGAAATAGTCCTTTACGTGTTTTTTGAAGTCCTAAATGCAGCTAGAAACTATCTGAAGAAAGGTAGTTGTGACGTACAAAATGTTTCTTTTAAAAATGAAGAGTTACATGATTACAACAAAAGCACTGAAAATCAAAAACGTATCGTTAATAAAGAGTGGTCCGACGTACATAAAAATGGAACCAGTCATGAGACGTATACTCTATTCACCTTAAAATAGGTGACGCTGTACCTCAGCGCAATCAGGATTGGCGTAAAAAAATCTCTCTCTCTCTCACTCTATATATATATATATATATATTGTATATATATATAGATGAAAAAGGCCCTCATATGTAAACACATCTGATTTCTTTGTACTGCGAATGCTGTACGTAGCACATATGCACGTGACGTGGATTAACCTGGGCAGAAGAAATCACTGAAATCGTTGGTGTTATTTGGCACAGTCCAGGCAAATGCTGTTTTGCCTGCTAATGCGTGTCGTATCCGAGGCTGCCATTTTGTAACAAATTCTTTTGAAGGACCCACAGTTATTCTGCCTGTTATTTGCTGTCCTTGCCAAATGTCTTTGGTCATGAGGCGTCTCAGTTCTGCTGACAGACCGAGATGCATCCTGCTTTTTTTTCGAAAGGCTTAGCGTCATTGATCTCCGTCGAGTGTTTCCAAGCCTCCTGGTCGCTGATATCTCATCGGTGGCTGCATCTGCTCAGGCTTCCTGGGTCGAATGGAAGATTTGGGAGAGCTCTGTGTCGCCCAGGCCCTCGGGGGCCTCTAGATCTCCTTTGTTGACAGTAACCGAGCGCTGTCTAAAGGCACCGTTATTTCTTTGTCCTTCTAGTATCGTGTCTGGTCGAGGTGTGGTGTGGGTCGTCACCTTGCTCCTAAGTGAAAGTGTGTGAGTGCGTATTTCAAGTGTGTTTGTCCTCGAGCGAAAATGATTTTATGGTCCCTGACTGATCCGCTGCCTACAAAAGGTGTTAAGGTCATTAGTGCATGCATTGTGTGGGATATGCGGCCCTTCACATTGTAGTCTTTGCGTATGTTCCCCTTTGAAATCGACCGTGATGAGAGGACTCGTTATGTCAAACTAAAGCTGCCCAGTGTAGGAGAAGGCCTCTCGGGAAAGGCTAATGGAGCCGAGCGCTCTCACGCCATCTCTCTCCGCTGAGGGTGGTTAAATAGCCCCGTCGTTGTGGGCAGTGTGGTTGGGTTTATGTGCGTTGGTGGTCAAAAGAGTGGCCGACTCGTCCAGTGGTCCATCCTGATGCTCGGTGAAAGTCAACTCGATCTTGGTGAACTCGCTGTCCGTGGACTGAGGCGTCTTGTCCATGCGAGACGCCATCAGGGCGTTCTGATATTGCTGG
>TU85857
AAACAGTTTTATTATAGCAATTTCCATCTGCATTATATATATATAATATGTATATTTAAATCTGATATAGCATTGTCTGGTTTATATTATGTAAGCATACAATAGTACTCTCTGATTTATGACTGTACAGTATCTCTATACACATTCAAGATTGAAAATAGCAGCAGTGTATGACAGACTCAAACCGCATGTTAGAGCACCACATTTTTTGAAGACATTTCCTCTTTTCTAAGGCAGGCGATCAAATGTGAAAACACTGATCTGACCTGTAGGACATCACCAAATGCTTTAAGTGAAATGAAAGGGCGTTCCTCATTAACACAGTGTGAACAAACTGGAATAAGCAGTCAATGTAACAGAAGAACAGGAATGAAGCCTTTGTTAGTGTTCAACAATCACTACTTCACATCTCAAGCCCCTTAACAGTAGTTATGTTAATCTAACAAACTTATTCTACCTCTCAGCCTCTTATTAAATTCTGATAGTTTACTTTCAGTTATTTTGTCCTACCAGTAAGCTCATTAATTGGTCATGATTGTCCCTGCATAGCTGTTGCACTATTGCACTGAGAGGTTGCTACATAAAACACTTAAGACGTAAATGTCCTGATATCCAGCGGCTTTACACTTCTGACAGAAGCGTCTCAGGAGGTTCTGATTAAAAAAAAAAAAAAAAAAACAGCGGATAAAAACATCAGCCAGAGAAACGTTCCCCTTTGTGTCAAGAGCGTTAGTGTAATCTTGTCATAATAAAACCAAAATAAATACATTAATGCTGAATTATTTTCCTTTTTCATCTGTTTTAAAATCGATAAATCATTACAAGTACCTCTTTTACAATCCCATGGCATTGAGTCCTACATGAATAGCTTTTTTTCTAAAAATAATAAACGTAAGATAAAAGATCAAATATGGAATCTGAAGATGAGATATAGTTACAGTGTAAGTTCCTGAAATAGTCCTTTACGTGTTTTTTGAAGTCCTAAATGCAGCTAGAAACTATCTGAAGAAAGGTAGTTGTGACGTACAAAATGTTTCTTTTAAAAATGAAGAGTTACATGATTACAACAAAAGCACTGAAAATCAAAAACGTATCGTTAATAAAGAGTGGTCCGACGTACATAAAAATGGAACCAGTCATGAGACGTATACTCTATTCACCTTAAAATAGGTGACGCTGTACCTCAGCGCAATCAGGATTGGCGTAAAAAAATCTCTCTCTCTCTCACTCTATATATATATATATATATATATTGTATATATATATAGATGAAAAAGGCCCTCATATGTAAACACATCTGATTTCTTTGTACTGCGAATGCTGTACGTAGCACATATGCACGTGACGTGGATTAACCTGGGCAGAAGAAATCACTGAAATCGTTGGTGTTATTTGGCACAGTCCAGGCAAATGCTGTTTTGCCTGCTAATGCGTGTCGTATCCGAGGCTGCCATTTTGTAACAAATTCTTTTGAAGGACCCACAGTTATTCTGCCTGTTATTTGCTGTCCTTGCCAAATGTCTTTGGTCATGAGGCGTCTCAGTTCTGCTGACAGACCGAGATGCATCCTGCTTTTTTTTCGAAAGGCTTAGCGTCATTGATCTCCGTCGAGTGTTTCCAAGCCTCCTGGTCGCTGATATCTCATCGGTGGCTGCATCTGCTCAGGCTTCCTGGGTCGAATGGAAGATTTGGGAGAGCTCTGTGTCGCCCAGGCCCTCGGGGGCCTCTAGATCTCCTTTGTTGACAGTAACCGAGCGCTGTCTAAAGGCACCGTTATTTCTTTGTCCTTCTAGTATCGTGTCTGGTCGAGGTGTGGTGTGGGTCGTCACCTTGCTCCTAAGTGAAAGTGTGTGAGTGCGTATTTCAAGTGTGTTTGTCCTCGAGCGAAAATGATTTTATGGTCCCTGACTGATCCGCTGCCTACAAAAGGTGTTAAGGTCATTAGTGCATGCATTGTGTGGGATATGCGGCCCTTCACATTGTAGTCTTTGCGTATGTTCCCCTTTGAAATCGACCGTGATGAGAGGACTCGTTATGTCAAACTAAAGCTGCCCAGTGTAGGAGAAGGCCTCTCGGGAAAGGCTAATGGAGCCGAGCGCTCTCACGCCATCTCTCTCCGCTGAGGGTGGTTAAATAGCCCCGTCGTTGTGGGCAGTGTGGTTGGGTTTATGTGCGTTGGTGGTCAAAAGAGTGGCCGACTCGTCCAGTGGTCCATCCTGATGCTCGGTGAAAGTCAACTCGATCTTGGTGAACTCGCTGTCCGTGGACTGAGGCGTCTTGTCCATGCGAGACGCCATCAGGGCGTTCTGATATTGCTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU85856 False 2317 lncRNA 0.41 2 10274665 10277003
TU85857 True 2319 lncRNA 0.41 2 10274665 10277003

Neighbor

gene id symbol gene type direction distance location
CI01000012_10260457_10272063 NT5C2B, NT5C2, NT5C2A coding upstream 2403 10259735 ~ 10272262 (+)
CI01000012_10244843_10249396 NA coding upstream 25166 10244843 ~ 10249499 (+)
CI01000012_10223957_10235955 NA coding upstream 38389 10223697 ~ 10236276 (+)
CI01000012_10196272_10198737 HPS6 coding upstream 75849 10196272 ~ 10198816 (+)
CI01000012_09977219_09983804 NA coding upstream 290799 9977011 ~ 9983866 (+)
CI01000012_10296725_10299883 CYP17, CYP17A1 coding downstream 19625 10296628 ~ 10301555 (+)
CI01000012_10469322_10470665 LBX1A, LBX1 coding downstream 191580 10468583 ~ 10471373 (+)
CI01000012_10489814_10496226 TLX1, TLX1.L coding downstream 212724 10489727 ~ 10496584 (+)
CI01000012_10499885_10500843 SDHAF4 coding downstream 222212 10499215 ~ 10501778 (+)
CI01000012_10502102_10533782 NA coding downstream 225099 10502102 ~ 10533942 (+)
G75340 NA non-coding upstream 59446 10214916 ~ 10215219 (+)
G75339 NA non-coding upstream 59861 10214562 ~ 10214804 (+)
G75277 NA non-coding upstream 80667 10192989 ~ 10193998 (+)
G75272 NA non-coding upstream 134596 10138297 ~ 10140069 (+)
G75311 NA non-coding upstream 180495 10093847 ~ 10094170 (+)
G75349 NA non-coding downstream 16210 10293213 ~ 10293445 (+)
G75355 NA non-coding downstream 41990 10318993 ~ 10319285 (+)
G75356 NA non-coding downstream 43539 10320542 ~ 10320760 (+)
G75429 NA non-coding downstream 183085 10460088 ~ 10460387 (+)
G73578 NA other upstream 1907038 8366806 ~ 8367627 (+)
CI01000012_07806089_07811902 BEND3 other upstream 2466810 7805248 ~ 7811902 (+)
CI01000012_05923216_05928055 SRD5A2B other upstream 4350360 5922385 ~ 5929186 (+)
G71623 NA other upstream 4458060 5813517 ~ 5816605 (+)
G75533 NA other downstream 867814 11144817 ~ 11145739 (+)
G76385 NA other downstream 2353752 12630755 ~ 12675666 (+)
G76374 NA other downstream 2468528 12745531 ~ 12749169 (+)
CI01000012_13029637_13033226 RGS17 other downstream 2738503 13029435 ~ 13038899 (+)
G76645 NA other downstream 3374856 13651859 ~ 13652234 (+)

Expression


Co-expression Network