Gene
RNA
| Item | Value |
|---|---|
| gene id | G75601 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000012 |
| NCBI id | null |
| chromosome length | 13770000 |
| location | 10490985 ~ 10501076 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU86247 | True | 8610 | lncRNA | 0.35 | 2 | 10490985 | 10501076 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000012_10395715_10408849 | SLC2A15A | coding | downstream | 82136 | 10395628 ~ 10408849 (-) |
| CI01000012_10358145_10364166 | FGF8, FGF8A, FGF8.L | coding | downstream | 126819 | 10357341 ~ 10364166 (-) |
| CI01000012_10322141_10348992 | FBXW4 | coding | downstream | 141993 | 10322141 ~ 10348992 (-) |
| CI01000012_10303346_10315263 | WBP1LA | coding | downstream | 175085 | 10303163 ~ 10315900 (-) |
| CI01000012_10276814_10291389 | CNNM2, CNNM4, CNNM2B, CNNM2A | coding | downstream | 198782 | 10276259 ~ 10292203 (-) |
| CI01000012_10626417_10638842 | B3GAT2 | coding | upstream | 124813 | 10625889 ~ 10638963 (-) |
| CI01000012_10639383_10640319 | NA | coding | upstream | 138085 | 10639161 ~ 10640848 (-) |
| CI01000012_10696109_10703071 | NA | coding | upstream | 194680 | 10687849 ~ 10703186 (-) |
| CI01000012_10705713_10710443 | ASRGL1 | coding | upstream | 204637 | 10705713 ~ 10710443 (-) |
| CI01000012_10799203_10801485 | NA | coding | upstream | 297702 | 10798778 ~ 10801537 (-) |
| G75676 | NA | non-coding | downstream | 135215 | 10355501 ~ 10355770 (-) |
| G75675 | NA | non-coding | downstream | 135514 | 10355244 ~ 10355471 (-) |
| G75673 | NA | non-coding | downstream | 136847 | 10353936 ~ 10354138 (-) |
| G75669 | NA | non-coding | downstream | 140620 | 10350106 ~ 10350365 (-) |
| G75751 | NA | non-coding | upstream | 48994 | 10550070 ~ 10551220 (-) |
| G75796 | NA | non-coding | upstream | 213022 | 10714098 ~ 10764080 (-) |
| G75607 | NA | non-coding | upstream | 263087 | 10764163 ~ 10791209 (-) |
| G75814 | NA | non-coding | upstream | 295344 | 10796420 ~ 10796654 (-) |
| G74982 | NA | other | downstream | 915013 | 9575648 ~ 9576149 (-) |
| CI01000012_09400481_09401810 | EIF4EBP2 | other | downstream | 1089017 | 9398076 ~ 9402378 (-) |
| CI01000012_09082056_09083285 | NA | other | downstream | 1407496 | 9081877 ~ 9083489 (-) |
| CI01000012_09071892_09073410 | NA | other | downstream | 1417528 | 9071371 ~ 9073457 (-) |
| CI01000012_09068458_09070536 | NA | other | downstream | 1420318 | 9067906 ~ 9070765 (-) |
| G75608 | NA | other | upstream | 110839 | 10611915 ~ 10620871 (-) |
| CI01000012_12047175_12052116 | NA | other | upstream | 1547968 | 12046728 ~ 12052541 (-) |
| CI01000012_12079581_12084139 | NA | other | upstream | 1577860 | 12078936 ~ 12084260 (-) |
| CI01000012_12954694_12954954 | SF3B5, BRAFLDRAFT_284483 | other | upstream | 2453370 | 12954446 ~ 12957833 (-) |
| G77287 | NA | other | upstream | 3118200 | 13619276 ~ 13633819 (-) |
