Gene
RNA
| Item | Value |
|---|---|
| gene id | G75814 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000012 |
| NCBI id | null |
| chromosome length | 13770000 |
| location | 10796420 ~ 10796654 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| description |
|---|
| PREDICTED: eosinophil peroxidase-like |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU86503 | True | 235 | lncRNA | 0.35 | 1 | 10796420 | 10796654 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000012_10705713_10710443 | ASRGL1 | coding | downstream | 85977 | 10705713 ~ 10710443 (-) |
| CI01000012_10696109_10703071 | NA | coding | downstream | 93234 | 10687849 ~ 10703186 (-) |
| CI01000012_10639383_10640319 | NA | coding | downstream | 155572 | 10639161 ~ 10640848 (-) |
| CI01000012_10626417_10638842 | B3GAT2 | coding | downstream | 157457 | 10625889 ~ 10638963 (-) |
| CI01000012_10395715_10408849 | SLC2A15A | coding | downstream | 387571 | 10395628 ~ 10408849 (-) |
| CI01000012_10799203_10801485 | NA | coding | upstream | 2124 | 10798778 ~ 10801537 (-) |
| CI01000012_10837437_10841732 | NA | coding | upstream | 40761 | 10837415 ~ 10841804 (-) |
| CI01000012_10934571_10937915 | NA | coding | upstream | 137845 | 10934499 ~ 10937915 (-) |
| CI01000012_10939589_10944243 | EEF1A1B, EEF1A1, EEF1A1A, EEF1A1.L, EF1A1 | coding | upstream | 142301 | 10938955 ~ 10944243 (-) |
| CI01000012_10947838_10952009 | SLC17A5 | coding | upstream | 151184 | 10947838 ~ 10952009 (-) |
| G75607 | NA | non-coding | downstream | 5211 | 10764163 ~ 10791209 (-) |
| G75796 | NA | non-coding | downstream | 32340 | 10714098 ~ 10764080 (-) |
| G75751 | NA | non-coding | downstream | 245200 | 10550070 ~ 10551220 (-) |
| G75601 | NA | non-coding | downstream | 295344 | 10490985 ~ 10501076 (-) |
| G75875 | NA | non-coding | upstream | 123567 | 10920221 ~ 10922346 (-) |
| G75892 | NA | non-coding | upstream | 126068 | 10922722 ~ 10927672 (-) |
| G75931 | NA | non-coding | upstream | 322866 | 11119520 ~ 11119825 (-) |
| G75932 | NA | non-coding | upstream | 323289 | 11119943 ~ 11121104 (-) |
| G75933 | NA | non-coding | upstream | 324650 | 11121304 ~ 11121901 (-) |
| G75608 | NA | other | downstream | 175549 | 10611915 ~ 10620871 (-) |
| G74982 | NA | other | downstream | 1220448 | 9575648 ~ 9576149 (-) |
| CI01000012_09400481_09401810 | EIF4EBP2 | other | downstream | 1394452 | 9398076 ~ 9402378 (-) |
| CI01000012_09082056_09083285 | NA | other | downstream | 1712931 | 9081877 ~ 9083489 (-) |
| CI01000012_09071892_09073410 | NA | other | downstream | 1722963 | 9071371 ~ 9073457 (-) |
| CI01000012_12047175_12052116 | NA | other | upstream | 1252390 | 12046728 ~ 12052541 (-) |
| CI01000012_12079581_12084139 | NA | other | upstream | 1282282 | 12078936 ~ 12084260 (-) |
| CI01000012_12954694_12954954 | SF3B5, BRAFLDRAFT_284483 | other | upstream | 2157792 | 12954446 ~ 12957833 (-) |
| G77287 | NA | other | upstream | 2822622 | 13619276 ~ 13633819 (-) |
