Gene
RNA
| Item | Value |
|---|---|
| gene id | G76236 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000012 |
| NCBI id | null |
| chromosome length | 13770000 |
| location | 12030290 ~ 12031920 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU86985 | True | 1631 | lncRNA | 0.37 | 1 | 12030290 | 12031920 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000012_12016924_12024791 | MCMBP | coding | upstream | 5255 | 12016924 ~ 12025035 (+) |
| CI01000012_11995593_12005292 | CGAT2, CSGALNACT2 | coding | upstream | 24938 | 11995593 ~ 12005352 (+) |
| CI01000012_11981083_11993407 | RET | coding | upstream | 36197 | 11981083 ~ 11994093 (+) |
| CI01000012_11932267_11962143 | NA | coding | upstream | 68082 | 11932267 ~ 11962208 (+) |
| CI01000012_11913513_11921468 | SGPL1 | coding | upstream | 108355 | 11913513 ~ 11921935 (+) |
| CI01000012_12054427_12060390 | TIAL1 | coding | downstream | 22507 | 12054427 ~ 12060390 (+) |
| CI01000012_12128962_12130578 | ITPRIP | coding | downstream | 96526 | 12128446 ~ 12132127 (+) |
| CI01000012_12159352_12162539 | NA | coding | downstream | 126728 | 12158648 ~ 12162839 (+) |
| CI01000012_12173747_12212480 | VCLA, VCL | coding | downstream | 141468 | 12173388 ~ 12213285 (+) |
| CI01000012_12220568_12234927 | NA | coding | downstream | 188078 | 12219998 ~ 12235263 (+) |
| G76212 | NA | non-coding | upstream | 1100 | 12025843 ~ 12029190 (+) |
| G76247 | NA | non-coding | upstream | 64981 | 11964524 ~ 11965309 (+) |
| G76198 | NA | non-coding | upstream | 104773 | 11920259 ~ 11925517 (+) |
| G76261 | NA | non-coding | upstream | 134091 | 11895999 ~ 11896199 (+) |
| G76181 | NA | non-coding | upstream | 188479 | 11840055 ~ 11841811 (+) |
| G76281 | NA | non-coding | downstream | 1883 | 12033803 ~ 12034004 (+) |
| G76238 | NA | non-coding | downstream | 2595 | 12034515 ~ 12035608 (+) |
| G76245 | NA | non-coding | downstream | 3970 | 12035890 ~ 12036924 (+) |
| G76282 | NA | non-coding | downstream | 5197 | 12037117 ~ 12037387 (+) |
| G76283 | NA | non-coding | downstream | 6612 | 12038532 ~ 12039038 (+) |
| G75533 | NA | other | upstream | 884551 | 11144817 ~ 11145739 (+) |
| CI01000012_10223957_10235955 | NA | other | upstream | 1806003 | 10223697 ~ 10236276 (+) |
| G73578 | NA | other | upstream | 3662663 | 8366806 ~ 8367627 (+) |
| CI01000012_07806089_07811902 | BEND3 | other | upstream | 4222435 | 7805248 ~ 7811902 (+) |
| CI01000012_05923216_05928055 | SRD5A2B | other | upstream | 6105985 | 5922385 ~ 5929186 (+) |
| G76385 | NA | other | downstream | 598835 | 12630755 ~ 12675666 (+) |
| G76374 | NA | other | downstream | 713611 | 12745531 ~ 12749169 (+) |
| CI01000012_13029637_13033226 | RGS17 | other | downstream | 983586 | 13029435 ~ 13038899 (+) |
| G76645 | NA | other | downstream | 1619939 | 13651859 ~ 13652234 (+) |
| G76656 | NA | other | downstream | 1671567 | 13703487 ~ 13739731 (+) |
