G76290


Basic Information

Item Value
gene id G76290
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 12045077 ~ 12045313 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU87039
TGGACCTTAATGCTTATGTTTTTAACTGTTTCCATTCGATTCACATCATACAAATTCATACAAAATTGGCACATCATAAAATGGTTGTTTTCTCATGAGATAGGGTTGAAACTCGCTGAAACATAGGCCTTATACACTTATGTAAAACTTTTTTTTTTTTTAAACATACCAACCTTTTGTTTTTTATTAATATAATATAGACTATATTAATGATAGTCTTTGAAATCCATCCTAAAA

Function

NR:

description
PREDICTED: protocadherin-16-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU87039 True 237 lncRNA 0.27 1 12045077 12045313

Neighbor

gene id symbol gene type direction distance location
CI01000012_12016924_12024791 MCMBP coding upstream 20042 12016924 ~ 12025035 (+)
CI01000012_11995593_12005292 CGAT2, CSGALNACT2 coding upstream 39725 11995593 ~ 12005352 (+)
CI01000012_11981083_11993407 RET coding upstream 50984 11981083 ~ 11994093 (+)
CI01000012_11932267_11962143 NA coding upstream 82869 11932267 ~ 11962208 (+)
CI01000012_11913513_11921468 SGPL1 coding upstream 123142 11913513 ~ 11921935 (+)
CI01000012_12054427_12060390 TIAL1 coding downstream 9114 12054427 ~ 12060390 (+)
CI01000012_12128962_12130578 ITPRIP coding downstream 83133 12128446 ~ 12132127 (+)
CI01000012_12159352_12162539 NA coding downstream 113335 12158648 ~ 12162839 (+)
CI01000012_12173747_12212480 VCLA, VCL coding downstream 128075 12173388 ~ 12213285 (+)
CI01000012_12220568_12234927 NA coding downstream 174685 12219998 ~ 12235263 (+)
G76220 NA non-coding upstream 892 12043779 ~ 12044185 (+)
G76289 NA non-coding upstream 1915 12042883 ~ 12043162 (+)
G76288 NA non-coding upstream 2498 12042365 ~ 12042579 (+)
G76287 NA non-coding upstream 2766 12042032 ~ 12042311 (+)
G76286 NA non-coding upstream 3277 12041428 ~ 12041800 (+)
G76293 NA non-coding downstream 23525 12068838 ~ 12069166 (+)
G76299 NA non-coding downstream 31597 12076910 ~ 12077124 (+)
G76306 NA non-coding downstream 65114 12110427 ~ 12110646 (+)
G76315 NA non-coding downstream 118870 12164183 ~ 12164411 (+)
G76316 NA non-coding downstream 119648 12164961 ~ 12165232 (+)
G75533 NA other upstream 899338 11144817 ~ 11145739 (+)
CI01000012_10223957_10235955 NA other upstream 1820790 10223697 ~ 10236276 (+)
G73578 NA other upstream 3677450 8366806 ~ 8367627 (+)
CI01000012_07806089_07811902 BEND3 other upstream 4237222 7805248 ~ 7811902 (+)
CI01000012_05923216_05928055 SRD5A2B other upstream 6120772 5922385 ~ 5929186 (+)
G76385 NA other downstream 585442 12630755 ~ 12675666 (+)
G76374 NA other downstream 700218 12745531 ~ 12749169 (+)
CI01000012_13029637_13033226 RGS17 other downstream 970193 13029435 ~ 13038899 (+)
G76645 NA other downstream 1606546 13651859 ~ 13652234 (+)
G76656 NA other downstream 1658174 13703487 ~ 13739731 (+)

Expression


Co-expression Network