Item | Value |
---|---|
gene id | G76306 |
gene name | NA |
gene type | non-coding |
species | grasscarp (Ctenopharyngodon idella) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | CI01000012 |
NCBI id | null |
chromosome length | 13770000 |
location | 12110427 ~ 12110646 (+) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TU87055 | True | 220 | lncRNA | 0.34 | 1 | 12110427 | 12110646 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
CI01000012_12054427_12060390 | TIAL1 | coding | upstream | 50037 | 12054427 ~ 12060390 (+) |
CI01000012_12016924_12024791 | MCMBP | coding | upstream | 85392 | 12016924 ~ 12025035 (+) |
CI01000012_11995593_12005292 | CGAT2, CSGALNACT2 | coding | upstream | 105075 | 11995593 ~ 12005352 (+) |
CI01000012_11981083_11993407 | RET | coding | upstream | 116334 | 11981083 ~ 11994093 (+) |
CI01000012_11932267_11962143 | NA | coding | upstream | 148219 | 11932267 ~ 11962208 (+) |
CI01000012_12128962_12130578 | ITPRIP | coding | downstream | 17800 | 12128446 ~ 12132127 (+) |
CI01000012_12159352_12162539 | NA | coding | downstream | 48002 | 12158648 ~ 12162839 (+) |
CI01000012_12173747_12212480 | VCLA, VCL | coding | downstream | 62742 | 12173388 ~ 12213285 (+) |
CI01000012_12220568_12234927 | NA | coding | downstream | 109352 | 12219998 ~ 12235263 (+) |
CI01000012_12270454_12276521 | NA | coding | downstream | 159700 | 12270346 ~ 12276625 (+) |
G76299 | NA | non-coding | upstream | 33303 | 12076910 ~ 12077124 (+) |
G76293 | NA | non-coding | upstream | 41261 | 12068838 ~ 12069166 (+) |
G76290 | NA | non-coding | upstream | 65114 | 12045077 ~ 12045313 (+) |
G76220 | NA | non-coding | upstream | 66242 | 12043779 ~ 12044185 (+) |
G76289 | NA | non-coding | upstream | 67265 | 12042883 ~ 12043162 (+) |
G76315 | NA | non-coding | downstream | 53537 | 12164183 ~ 12164411 (+) |
G76316 | NA | non-coding | downstream | 54315 | 12164961 ~ 12165232 (+) |
G76318 | NA | non-coding | downstream | 57522 | 12168168 ~ 12168455 (+) |
G76327 | NA | non-coding | downstream | 322253 | 12432899 ~ 12433158 (+) |
G76222 | NA | non-coding | downstream | 323023 | 12433669 ~ 12435061 (+) |
G75533 | NA | other | upstream | 964688 | 11144817 ~ 11145739 (+) |
CI01000012_10223957_10235955 | NA | other | upstream | 1886140 | 10223697 ~ 10236276 (+) |
G73578 | NA | other | upstream | 3742800 | 8366806 ~ 8367627 (+) |
CI01000012_07806089_07811902 | BEND3 | other | upstream | 4302572 | 7805248 ~ 7811902 (+) |
CI01000012_05923216_05928055 | SRD5A2B | other | upstream | 6186122 | 5922385 ~ 5929186 (+) |
G76385 | NA | other | downstream | 520109 | 12630755 ~ 12675666 (+) |
G76374 | NA | other | downstream | 634885 | 12745531 ~ 12749169 (+) |
CI01000012_13029637_13033226 | RGS17 | other | downstream | 904860 | 13029435 ~ 13038899 (+) |
G76645 | NA | other | downstream | 1541213 | 13651859 ~ 13652234 (+) |
G76656 | NA | other | downstream | 1592841 | 13703487 ~ 13739731 (+) |