Gene
RNA
| Item | Value |
|---|---|
| gene id | G76232 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000012 |
| NCBI id | null |
| chromosome length | 13770000 |
| location | 12479640 ~ 12486248 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU86981 | True | 1755 | lncRNA | 0.39 | 3 | 12479640 | 12486248 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000012_12440074_12465741 | SLKA, SLKB, SLK | coding | upstream | 13608 | 12440074 ~ 12466032 (+) |
| CI01000012_12381049_12417489 | KAT6B | coding | upstream | 60943 | 12380192 ~ 12418697 (+) |
| CI01000012_12378120_12378419 | NA | coding | upstream | 100978 | 12378120 ~ 12378662 (+) |
| CI01000012_12292583_12371612 | ADK, ADKA | coding | upstream | 108028 | 12292583 ~ 12371612 (+) |
| CI01000012_12270454_12276521 | NA | coding | upstream | 203015 | 12270346 ~ 12276625 (+) |
| CI01000012_12489485_12490402 | NA | coding | downstream | 3039 | 12489287 ~ 12490431 (+) |
| CI01000012_12505469_12509093 | ERLIN1, ERLIN2 | coding | downstream | 19221 | 12505469 ~ 12509316 (+) |
| CI01000012_12536242_12538668 | NA | coding | downstream | 49828 | 12536076 ~ 12538728 (+) |
| CI01000012_12585843_12587149 | NA | coding | downstream | 99595 | 12585843 ~ 12587209 (+) |
| CI01000012_12621489_12646263 | NA | coding | downstream | 135090 | 12621338 ~ 12646399 (+) |
| G76329 | NA | non-coding | upstream | 41411 | 12438009 ~ 12438229 (+) |
| G76328 | NA | non-coding | upstream | 41725 | 12437694 ~ 12437915 (+) |
| G76244 | NA | non-coding | upstream | 42150 | 12437112 ~ 12437490 (+) |
| G76230 | NA | non-coding | upstream | 43315 | 12436031 ~ 12436325 (+) |
| G76222 | NA | non-coding | upstream | 44579 | 12433669 ~ 12435061 (+) |
| G76332 | NA | non-coding | downstream | 6401 | 12492649 ~ 12492849 (+) |
| G76335 | NA | non-coding | downstream | 10587 | 12496835 ~ 12499657 (+) |
| G76340 | NA | non-coding | downstream | 14872 | 12501120 ~ 12501330 (+) |
| G76341 | NA | non-coding | downstream | 16964 | 12503212 ~ 12503530 (+) |
| G76239 | NA | non-coding | downstream | 30818 | 12517066 ~ 12523981 (+) |
| G75533 | NA | other | upstream | 1333901 | 11144817 ~ 11145739 (+) |
| CI01000012_10223957_10235955 | NA | other | upstream | 2255353 | 10223697 ~ 10236276 (+) |
| G73578 | NA | other | upstream | 4112013 | 8366806 ~ 8367627 (+) |
| CI01000012_07806089_07811902 | BEND3 | other | upstream | 4671785 | 7805248 ~ 7811902 (+) |
| CI01000012_05923216_05928055 | SRD5A2B | other | upstream | 6555335 | 5922385 ~ 5929186 (+) |
| G76385 | NA | other | downstream | 144507 | 12630755 ~ 12675666 (+) |
| G76374 | NA | other | downstream | 259283 | 12745531 ~ 12749169 (+) |
| CI01000012_13029637_13033226 | RGS17 | other | downstream | 529258 | 13029435 ~ 13038899 (+) |
| G76645 | NA | other | downstream | 1165611 | 13651859 ~ 13652234 (+) |
| G76656 | NA | other | downstream | 1217239 | 13703487 ~ 13739731 (+) |
