Gene
RNA
| Item | Value |
|---|---|
| gene id | G77243 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000012 |
| NCBI id | null |
| chromosome length | 13770000 |
| location | 13061905 ~ 13062333 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU88098 | True | 429 | lncRNA | 0.44 | 1 | 13061905 | 13062333 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000012_13041401_13060443 | PCNXL2 | coding | downstream | 1462 | 13040652 ~ 13060443 (-) |
| CI01000012_13015424_13018020 | NA | coding | downstream | 42260 | 13015374 ~ 13019645 (-) |
| CI01000012_12977279_12978570 | NA | coding | downstream | 83088 | 12977022 ~ 12978817 (-) |
| CI01000012_12960774_12964242 | OPRM1 | coding | downstream | 96976 | 12959701 ~ 12964929 (-) |
| CI01000012_12954694_12954954 | SF3B5, BRAFLDRAFT_284483 | coding | downstream | 104072 | 12954446 ~ 12957833 (-) |
| CI01000012_13085906_13090647 | NA | coding | upstream | 21784 | 13084117 ~ 13090653 (-) |
| CI01000012_13231532_13268248 | KHDRBS2 | coding | upstream | 169199 | 13231532 ~ 13268248 (-) |
| CI01000012_13277959_13281157 | NA | coding | upstream | 215444 | 13277777 ~ 13282518 (-) |
| CI01000012_13324234_13357963 | SORBS1 | coding | upstream | 261476 | 13323809 ~ 13357963 (-) |
| CI01000012_13374979_13384349 | NA | coding | upstream | 312477 | 13374810 ~ 13384349 (-) |
| G77238 | NA | non-coding | downstream | 19140 | 13042541 ~ 13042765 (-) |
| G77237 | NA | non-coding | downstream | 19683 | 13042013 ~ 13042222 (-) |
| G77207 | NA | non-coding | downstream | 140103 | 12921578 ~ 12921802 (-) |
| G77205 | NA | non-coding | downstream | 142592 | 12918932 ~ 12919313 (-) |
| G77202 | NA | non-coding | downstream | 145232 | 12916431 ~ 12916673 (-) |
| G77241 | NA | non-coding | upstream | 19658 | 13081991 ~ 13083934 (-) |
| G77254 | NA | non-coding | upstream | 31947 | 13094280 ~ 13094498 (-) |
| G77256 | NA | non-coding | upstream | 35054 | 13097387 ~ 13097692 (-) |
| G77348 | NA | non-coding | upstream | 107810 | 13170143 ~ 13170470 (-) |
| G77349 | NA | non-coding | upstream | 108803 | 13171136 ~ 13171361 (-) |
| CI01000012_12079581_12084139 | NA | other | downstream | 977645 | 12078936 ~ 12084260 (-) |
| CI01000012_12047175_12052116 | NA | other | downstream | 1009698 | 12046728 ~ 12052541 (-) |
| G75608 | NA | other | downstream | 2441034 | 10611915 ~ 10620871 (-) |
| G74982 | NA | other | downstream | 3485933 | 9575648 ~ 9576149 (-) |
| G77287 | NA | other | upstream | 556943 | 13619276 ~ 13633819 (-) |
