G76594


Basic Information

Item Value
gene id G76594
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 13538521 ~ 13539179 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU87382
TAAGTATACATATATGTATAATGCACACACAAATCAGTCATGACACTACACAGATAAAACTGTAATGGATTTAAAAAAAAACATGTGATATGAGGTAGGAATTAATTGGCTTAAGACAATTGTGAGTGTAATTATGTACAAGGGTCTGTCACCACTGATTTATTATTAAACTTAACACTCATCATTAAAAACAAAATAAAAGTAGTCAACAGTTATTTGAAGCTTATGTGCACTATTTCACTCAAATTTTTTTCAAGTAATTGTTTCACAGCATTATCTTTGTGATGTACACCAAGTATCAGAAGAGGTTTTTGTTTTTATCACAAGTGGACCCCGGGTAGTGCCTCATGGGCAGCAGGAGGTAGCTGGAAGATCATATCTTCCTGTTGAAGGTGACGGAGGAGTTTCTCTAATGGCGCATACCGGCGAAGGGTGGGGGCTGAGCCTAGCATGAGGAGCTTGTGTTTGGCTCTAGTGATGGCCACATTCAGTCTACGCCAGTCTTGGAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU87382 True 509 lncRNA 0.39 2 13538521 13539179

Neighbor

gene id symbol gene type direction distance location
CI01000012_13533459_13538332 PBLD2, PBLD coding upstream 78 13533390 ~ 13538443 (+)
CI01000012_13527966_13529695 PBLDP, PBLD coding upstream 8759 13527184 ~ 13529762 (+)
CI01000012_13522084_13525252 PBLD2, PBLD coding upstream 13202 13522084 ~ 13525319 (+)
CI01000012_13498541_13510228 RUFY2 coding upstream 28256 13498541 ~ 13510265 (+)
CI01000012_13471010_13484053 TSPAN15 coding upstream 52509 13471010 ~ 13486220 (+)
CI01000012_13551086_13554035 NA coding downstream 11594 13550773 ~ 13554312 (+)
CI01000012_13559514_13590448 PSD coding downstream 20335 13559514 ~ 13590493 (+)
CI01000012_13619458_13633023 GDH1, GLUD1B, GLUD1A, GDH2, GDH3.2, GLUD1, GDH03, GDH01, GLUD1.S coding downstream 79830 13619009 ~ 13633801 (+)
CI01000012_13653033_13672573 NA coding downstream 113854 13653033 ~ 13672988 (+)
G76600 NA non-coding upstream 17203 13520992 ~ 13521318 (+)
CI01000012_13442338_13442897 NA non-coding upstream 96857 13440853 ~ 13443219 (+)
G76569 NA non-coding upstream 149368 13388853 ~ 13389153 (+)
G76629 NA non-coding downstream 16814 13555993 ~ 13556230 (+)
G76630 NA non-coding downstream 18246 13557425 ~ 13557687 (+)
G76584 NA non-coding downstream 52320 13591499 ~ 13593268 (+)
G76657 NA non-coding downstream 159708 13698887 ~ 13701764 (+)
G76656 NA non-coding downstream 199994 13703487 ~ 13739731 (+)
CI01000012_13029637_13033226 RGS17 other upstream 499622 13029435 ~ 13038899 (+)
G76374 NA other upstream 789352 12745531 ~ 12749169 (+)
G76385 NA other upstream 862855 12630755 ~ 12675666 (+)
G75533 NA other upstream 2392782 11144817 ~ 11145739 (+)
CI01000012_10223957_10235955 NA other upstream 3314234 10223697 ~ 10236276 (+)
G76645 NA other downstream 112680 13651859 ~ 13652234 (+)

Expression


Co-expression Network