G76656


Basic Information

Item Value
gene id G76656
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 13703487 ~ 13739731 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU87448
TTACAAAGGGTCTTGTGATGAATTTTGCATAAGTGTAATCATACCTGATGATGTTGTTGCAGGATCCACACAGAGGTGTTCTGTTGCTGGCTGCAAACCGCTCTGCCCTTTGAGCAACTCCACGAGCCACAGGTGGGAAGGGAGCGGGGCTGAACGGAGCAGGGGAAGGGTTGAATGCAGGGCTGGGTGCAACAGGAGCAGGAGCAGGGACTGGGTTGGGGATGTAGGCTGGTGGTGGTGGTGCCGCCTGAGGAAGAGGCTGCACTTTGATATGTGTGGTGGTGGTGGGTTTGCTAGGGTCAAATTTCTGGGCAAAGTTCTCATCAGTAACCCAAGGAGGCCTGTTGGAAGACGCTGGAGCTGCGACAGGAGCAGGTGGAGGTGGAGCAGGTTTGTAAACCATTGGAGGAGCTGGTGCTGGGAGTACATGCTGATGGGGGTGTTGTACTGGGCATGGATGATGGTGGCCTTGCCTCCAGGCCCCTTCACCTCAATGGGCTTATGGGTGGAGAGGGCAGAGTCCTTCAGAGCTATAGGATTGAAGCTGGACAGGTACTCATTGCTGTGCAAGTGAGGGAAAGGTTATAAGGGATGAGTATGGGTAGAAGAGAGACAAAAAAGATAAAATGGAGGTTAGAGTGAGAGGGAGGGAGTGTGGA
>TU87452
TGAACTAATGAATCACTGTCTATCTGGTCAAGATTTTGGGTTCTTACCCTAGAAACGGTGAGGGGCATGTTGAAGTCCTTGCCTCCTTGCAACCGGAAGCCCCAAGGCGAAGGTCCAGCGAGTGATACGTTGTAAGAACTCATTGTTCAAAAAAGCTTGTGTATTGTTTAAGCAACAGAATTTCTCCAAAATTATGGGGAAAATGGATTGGGAGGGGGCGGGGCACGTGCCAAACAGCCTCCAAATACAATGCAAAATAACTGGAGCAACAGAGAAGAGCTATCAGCCAGAGGAAGAGGATTTTTGCCTGCTCGGATGAGCTGGACAGACAGCCTAAGAATAGCTGCCCCTCTGCCGAGAGCGATAGCACTATGGCATTGAGGGGAGGGAGGAGGAAGGGGTACTTATATGGCATGTAAGGGGACACCCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU87448 False 659 TUCP 0.53 2 13703487 13718704
TU87452 True 430 lncRNA 0.49 2 13739173 13739731

Neighbor

gene id symbol gene type direction distance location
CI01000012_13653033_13672573 NA coding upstream 66185 13653033 ~ 13672988 (+)
CI01000012_13619458_13633023 GDH1, GLUD1B, GLUD1A, GDH2, GDH3.2, GLUD1, GDH03, GDH01, GLUD1.S coding upstream 105372 13619009 ~ 13633801 (+)
CI01000012_13559514_13590448 PSD coding upstream 148680 13559514 ~ 13590493 (+)
CI01000012_13551086_13554035 NA coding upstream 184861 13550773 ~ 13554312 (+)
CI01000012_13533459_13538332 PBLD2, PBLD coding upstream 200730 13533390 ~ 13538443 (+)
G76657 NA non-coding upstream 37409 13698887 ~ 13701764 (+)
G76584 NA non-coding upstream 145905 13591499 ~ 13593268 (+)
G76630 NA non-coding upstream 181486 13557425 ~ 13557687 (+)
G76629 NA non-coding upstream 182943 13555993 ~ 13556230 (+)
G76594 NA non-coding upstream 199994 13538521 ~ 13539179 (+)
G76669 NA non-coding downstream 5186 13744917 ~ 13745623 (+)
G76656 NA other upstream 20469 13703487 ~ 13739731 (+)
G76645 NA other upstream 86939 13651859 ~ 13652234 (+)
CI01000012_13029637_13033226 RGS17 other upstream 700274 13029435 ~ 13038899 (+)
G76374 NA other upstream 990004 12745531 ~ 12749169 (+)
G76385 NA other upstream 1063507 12630755 ~ 12675666 (+)
G75533 NA other upstream 2557748 11144817 ~ 11145739 (+)

Expression


Co-expression Network