G77447


Basic Information

Item Value
gene id G77447
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 13724897 ~ 13726271 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU88320
GTGTGTCCAAAAGTTTGAATGATGACATTTGAAGAAGGATGTGGCAGTAATGGAAAATTCAATATTGTCTACAACATAAGTAACATTTACAGTTTGGAGAATAGAATAGAATAGAATAGAATAGAAGTGTCCATGTTGGATAGAATTGTCCATCCTGATTAAAATGACACCAGGAAGTTTTGCTCAGGGATAACATCATGATTCCCATTTGAGTTTCTTCTAGGCTTCCATTCTGGTGAAGTTAGTAAAATGATCTGCCATGTTTACACTATGATCCACACTGATATTTCATCTCTCTTGGCGACCATAAGCTTGTATCAGTATCTTCACTGACAGCTCTGGGACAGCCTAGTTTTTCTTATCCTCTTGTGCGATTCTGCAGCTACAGCCCAATTATTAATTTAAATGATTATATTGAATGCAGATGTTAGTGGGTCTCATGGGTGACTGTGATGAAGGTGCTATTGTTCACTCATTCACTGCAGTGTAATAAAAGCAGGCTTTGACTGTTAAATGTAATCAATCATGGGATTAACTTTTATGAACCGTAAACAGACCGCAGCTTCAGTATATCACAAACATATGTGACTGAGATTGTGTGTGAGTTTAGATGAGCTGTCCAGCTGTGTTTTTATTCAGGGAAAGGTCATGTGATTTTATTGCCTTCATGTTTCCTCTGTTAGTCGAAAAAGAAGATATAAAGAGTATTATGACACATTCTGACAACTCACTGGCCTTATCAGATCAGACTAGCTGCTGAGTCATCATGTTACGTGTTGCCAACATTATTCAACAAGCGCCCTATAGCCAAGCATACACACATTTCAAAAGCTCTTCAAAACAGACAATATATCAATAATTCAGTAGCTCTAGCTTTTAGGAGCTTTCTTAATGGGCTCTGACGAGTGTCCATTTATCCATCAGCAGCTTCATACTCCATTTAACTTGATAAGCTATTTTCCAGCTTTGTTCTTCAACTCAAGGCTGGCCAGCACTGACACAACATACATAGCAATAAACAAAGCTATGTTCACTCTGCAGTTGATCAAGATCACTTTCTTATTCTTACATGGATCTGATTTTTGCACTATTTGCACTATTACACAACAGTTAGATTAGAATTCATGCTCTTTTTTTTTACCTTAACATTCACTTAACTAACTCAGTATTCATCATAATTGCATGCTAGATTTACCCATAAAATGAATATATGAATTGCACTTGGTGAAGAATTTAACCGAAAGGTAATAAATAAAGGGAAAAAAGTATGTGAAAAATACATTGATGGACATTGTGTAAATACACTACCGTTCAAAAGTTTACCGTTCAAAAAAATACTTTTATTCAATCTTGCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU88320 True 1355 lncRNA 0.36 2 13724897 13726271

Neighbor

gene id symbol gene type direction distance location
CI01000012_13688796_13690597 NA coding downstream 33534 13687662 ~ 13691363 (-)
CI01000012_13674799_13681526 BMPR1A, BMPR1AA coding downstream 43371 13674799 ~ 13681526 (-)
CI01000012_13640633_13647067 NA coding downstream 77805 13639127 ~ 13647092 (-)
CI01000012_13634251_13634759 NA coding downstream 90138 13634003 ~ 13634759 (-)
CI01000012_13608026_13615552 NA coding downstream 109331 13608019 ~ 13615566 (-)
CI01000012_13747055_13764699 OPN4A coding upstream 19653 13745924 ~ 13764699 (-)
G77424 NA non-coding downstream 137345 13585506 ~ 13587552 (-)
G77423 NA non-coding downstream 139514 13580834 ~ 13585383 (-)
G77409 NA non-coding downstream 171135 13553474 ~ 13553762 (-)
G77407 NA non-coding downstream 173312 13551252 ~ 13551585 (-)
G77315 NA non-coding downstream 238677 13485536 ~ 13486220 (-)
G77449 NA non-coding upstream 14843 13741114 ~ 13741441 (-)
G77287 NA other downstream 91078 13619276 ~ 13633819 (-)
CI01000012_12954694_12954954 SF3B5, BRAFLDRAFT_284483 other downstream 769233 12954446 ~ 12957833 (-)
CI01000012_12079581_12084139 NA other downstream 1640637 12078936 ~ 12084260 (-)
CI01000012_12047175_12052116 NA other downstream 1672690 12046728 ~ 12052541 (-)
G75608 NA other downstream 3104026 10611915 ~ 10620871 (-)

Expression


Co-expression Network