CI01000013_00082083_00124049 (YAP1)


Basic Information

Item Value
gene id CI01000013_00082083_00124049
gene name YAP1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 82083 ~ 124049 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_00082083_00124049.mRNA
ATGGATCCGAGCCAGCACAACCCTCCTGCCGGCCATCAGATCGTCCATGTTCGGGGAGACTCCGAGACCGATCTGGAGGCTCTTTTTAACGCTGTGATGAACCCGAAAAACACCATCGTCCCCCCTTCCGTGCCGATGAGGATGAGAAAGCTGCCAGACTCATTCTTCAAGCCGCCAGAGCCAAAGTCCCACTCCAGACAAGCCAGCACAGATGCAGGTACTGCTGGTACCCTCACGCCCCAGCATGTCAGGGCACACTCCTCACCTGCCTCCCTGCAGCTGGGCGCTGTTTCCCCTGGCAATCTGAGCAGCATGGGTCCAGCAAACGCCCCACCTCAGCATCTCCGCCAGTCCTCGTACGAGATACCCGATGATGTGCCACTGCCCCCAGGTTGGGAGATGGCCAAGACCCCTTCGGGACAGAGATACTTCTTAAACCATCATGACCAGACGACCACCTGGCAGGACCCACGTAAGGCCCTCCTTCAGATGAACCAGGCCGCCCCGGCCAGCCCAGTGCCTGTGCAGCAACAGAACATCATGAACCCTGCCTCAGGACCTCTTCCTGAAGGCTGGGAGCAAGCTATTACCTCAGAAGGAGAGATCTACTACATCAATCACAAAAACAAAACCACCTCTTGGCTGGACCCACGACTCGACCCGCGTTACGCTATGAACCAGCAGCGAATTTCCCAGAGTGCTCCAGTGAAGCAAGGCTCCCAGTTGCCCTCCAGCCCGCAGAGTGGAGTAATGGGTGGAAACAACCAGATCAGGCTGCAGCAGATCCAGATGGAGAAAGAGAGACTGAGGATCAAACAAGAGCTCCTTCGCCAGAGACCCCAGGAGCTCGCCCTGAGAAACCAGCTTCCAACCAGCATGGAGCAGGATGGCGGCACTCAAAACCCTGTGTCCTCACCCGGCATGGGCCAAGACGCCCGTAACATGACCACCAACAGCTCTGACCCTTTCTTGAACAGTGGGACATATCACTCCAGAGACGAGAGCACAGACAGCGGCTTGAGCATGAGCAGTTACAGCGTCCCCCGCACTCCAGACGACTTCCTCAACAGTGTGGACGAGATGGAGACAGGCGATACCCTCGGCCCCAGCTCCATGGCCACACAGCCCAGCCGTTTCCCCGACTACCTAGACGCCATCCCGGGCACAGATGTGGACCTGGGCACCCTGGAGGGGGAGAGCATGGCGGTGGAGGGCGAGGAGCTGATGCCCAGCCTGCAGGAAGCCCTGAGCTCTGACATACTCAACGACATGGAGTCCGTGCTGGCAGCTACCAAGATCGACAAGGAGAACTTTCTAACCTGGCTA

Function

symbol description
yap1 Involved in several processes, including dorsal/ventral axis specification; embryonic hemopoiesis; and heart formation. Acts upstream of with a positive effect on BMP signaling pathway. Acts upstream of or within several processes, including animal organ development; fin regeneration; and positive regulation of glutamate-ammonia ligase activity. Located in chromatin and nucleus. Is expressed in several structures, including central nervous system; digestive system; fin; mesoderm; and tail bud. Used to study coloboma. Human ortholog(s) of this gene implicated in uveal coloboma-cleft lip and palate-intellectual disability. Orthologous to human YAP1 (Yes1 associated transcriptional regulator).

NR:

description
Yes-associated protein 1

GO:

id name namespace
GO:0008022 protein C-terminus binding molecular_function

KEGG:

id description
K16687 YAP1, Yki; transcriptional coactivator YAP1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_00082083_00124049.mRNA True 1326 mRNA 0.58 8 82083 124049

Neighbor

gene id symbol gene type direction distance location
CI01000013_00055395_00073103 NA coding upstream 8651 54114 ~ 73432 (+)
CI01000013_00142867_00148461 SIX5 coding downstream 18818 142867 ~ 149008 (+)
CI01000013_00151644_00152374 SIX9 coding downstream 27086 151135 ~ 153096 (+)
CI01000013_00259782_00293697 MAP3K10 coding downstream 135733 259782 ~ 293697 (+)
CI01000013_00432775_00439564 RCN2 coding downstream 308726 432775 ~ 439579 (+)
CI01000013_00441663_00456168 PSTPIP1A coding downstream 317614 441663 ~ 456456 (+)
G77555 NA non-coding upstream 23665 58062 ~ 58418 (+)
G77505 NA non-coding downstream 10653 134702 ~ 135653 (+)
G77562 NA non-coding downstream 37534 161583 ~ 161803 (+)
G77507 NA non-coding downstream 38246 162295 ~ 165109 (+)
G77534 NA non-coding downstream 169109 293158 ~ 300396 (+)
G77538 NA non-coding downstream 234452 358501 ~ 359239 (+)
G77533 NA other downstream 584784 708833 ~ 709549 (+)
G77695 NA other downstream 822472 946521 ~ 952969 (+)
G79309 NA other downstream 2342716 2466765 ~ 2467171 (+)
G80062 NA other downstream 3459959 3584008 ~ 3584784 (+)
CI01000013_04051081_04064651 NA other downstream 3940884 4050837 ~ 4065829 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013548 yap1 coding NC_007129.7 CM002902.2 37283765 ~ 37355666 (-)
bowfin (Amia calva) AMCG00016312 yap1,LOC107662128,LOC107758259,LOC107746561,LOC107687356 coding CM030122.1 CM030122.1 15683434 ~ 15697259 (+)