CI01000013_00151644_00152374 (SIX9)


Basic Information

Item Value
gene id CI01000013_00151644_00152374
gene name SIX9
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 151135 ~ 153096 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_00151644_00152374.mRNA
ATTTAAATAAGCTCCATTGTGCACCTGACATCTTCCCCAGGTAATTGATACAAATACAAACAACATTTAGTCTGAAAGGTTTGTGCGTGTGTGTGTTGGTGACTGTCTGTTTTTTTAACCCCTATGCTCTCCGGTTACCTGCATGTACCAAGTTGTCTGGGCGGGTCTCTGTGGCTGAAGAAGGTAAAACCTGCTAAAAGAAAAAAAACCTGATACACTCATCGGCTGCACTTATTGGTTAACACGTCACCGGAGAACAAAAAGGACTATTGTGAGAACCTGACCTGAGAGTTTCTACACTGCATTCACATCACAAGGTACTTTGGTTTTGCACACTTCTGCACATTTCTGTATTCTTGTGAAGCTTGCTGTCGTGTGGATTTAATTATTAGTTTTCAGTCATCCTCTGGATTTCTTTAATGGACTTTGGTAATGTAGAGGGACAACTTGTTTTGCAGAACAATTCCTCAACATCCCTTGTGAGACCTTCCACCATCCTTGGTCCGATCATGGCGATGGGCTTCTCCCCAGAGCAGGTGGCATGTGTTTGTGAGGTTCTTCTCCAGAGTGGAAGCATGGATCGCTTGTCCTCTTTCTTATGCTCTTTATCTTCTGGTTCCACTTCGTCCAACGTGTATCTGGCCATGACACAGAGTCAGGAGAGCGTGCTGAAGGCACGGGCTGCGGTCGCCTTCCACCACTGCCGGTTTGCTGAGCTGTACGCCTTGTTAGAGGGGAACGTGTTCTCCCCACGCAGTCACCCTCTCCTCCAACAGCTCTGGCTCCGGGCTCACTACATGGAGGCTGAACTTCAGCGGGGCCGCCCTCTTGGAGCCGTGGGGAAGTACCGCATTCGTCGCAAGTTTCCTCTTCCACGTACCATCTGGGATGGAGAGGAGACCAGCTACTGCTTCAAGGAAAAGTCTCGCAGCGTGTTGAGAGAGTGGTACTGCAGAAAGCCGTACCCCTCGCCGCGAGAGAAACGAGATCTGGCTGCAGCCACTGGACTCACTGCTACACAAGTCAGCAACTGGTTCAAGAACCGTCGACAGCGGGACAGAGCTGCGACCAGCCGTCAAGAGTAAGAGAAACTCCCTCACTTTATTTACACGAGGGGCCGGACGACATAGTGGATCCCTGCTGATATACTCTTACTTTCTTAAGCACTATGAAAAGTTTAGACCAGAGGTTCTCAACATGGGGGCCTCAAGATGACAAAAATGGAAATTCTGTCATCATTTACTCACCCTAAAGTTGTTCCAAATCCAAACCCGTATAAATTTCTTTCTTCTGCTAAACACGAAAGAAGATATTTTGAAGAATATGGGTAACCAAACAGTTGATGGACCCCACTGACTTCCACAGTATGGAAAAAAAATTACTATGGAAGTCATTTAGGTCCCATTAACCGCTTGTTTACCGACTCTCTTCAAAATATCTTGCGTTCAGCAGAAGAAAGAAACTCGTACAGGATTTGGAACAACTTAAGGATGAGTAAATGTTGACAATTTTCATTTTTGGGTGAACTATCCCTTTAAAATTATTTAAAATAAGACAAAAGCATTTCATTGAGCTAAAACAACTGAAAACCAACATATTTTAATTCACCCCCTCAACAATTATTTTTCATTTTTGAAGAACCAGGGTTTCCACTGGATATATGAATTAGCCTAATTTTAAAAGTACAATTTTTATACGTTTTCCTACACCAAATTCTAACATATTTTATAGTGTAGAATTAATAGAATTGGTAGAATTTCCAGTGAAAATCACTTAAAAAAAACAAAACAAAAAAAAACCTTATCTA

Function

symbol description
six9 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Orthologous to human SIX2 (SIX homeobox 2).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_00151644_00152374.mRNA True 1807 mRNA 0.43 2 151135 153096

Neighbor

gene id symbol gene type direction distance location
CI01000013_00142867_00148461 SIX5 coding upstream 2127 142867 ~ 149008 (+)
CI01000013_00082083_00124049 YAP1 coding upstream 27086 82083 ~ 124049 (+)
CI01000013_00055395_00073103 NA coding upstream 77703 54114 ~ 73432 (+)
CI01000013_00259782_00293697 MAP3K10 coding downstream 106686 259782 ~ 293697 (+)
CI01000013_00432775_00439564 RCN2 coding downstream 279679 432775 ~ 439579 (+)
CI01000013_00441663_00456168 PSTPIP1A coding downstream 288567 441663 ~ 456456 (+)
CI01000013_00473761_00488628 NA coding downstream 320042 473138 ~ 488832 (+)
CI01000013_00490680_00491519 CH25HL1.1 coding downstream 337520 490616 ~ 491630 (+)
G77505 NA non-coding upstream 15482 134702 ~ 135653 (+)
G77541 NA non-coding upstream 36698 89806 ~ 114437 (+)
G77555 NA non-coding upstream 92717 58062 ~ 58418 (+)
G77562 NA non-coding downstream 8487 161583 ~ 161803 (+)
G77507 NA non-coding downstream 9199 162295 ~ 165109 (+)
G77534 NA non-coding downstream 140062 293158 ~ 300396 (+)
G77538 NA non-coding downstream 205405 358501 ~ 359239 (+)
G77635 NA non-coding downstream 218475 371571 ~ 371944 (+)
G77533 NA other downstream 555737 708833 ~ 709549 (+)
G77695 NA other downstream 793425 946521 ~ 952969 (+)
G79309 NA other downstream 2313669 2466765 ~ 2467171 (+)
G80062 NA other downstream 3430912 3584008 ~ 3584784 (+)
CI01000013_04051081_04064651 NA other downstream 3911837 4050837 ~ 4065829 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) LOC110507409 LOC106612510 coding NC_048591.1 CM023245.2 6222927 ~ 6224524 (-)