CI01000013_00473761_00488628


Basic Information

Item Value
gene id CI01000013_00473761_00488628
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 473138 ~ 488832 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_00473761_00488628.mRNA
GTATAAAGGAGCATCCGCCCCCATTCATCCACAAAACTGCTCCTGGAAAGCAAGAGAGAGCTAGGCGTCTCTGTCGCTATTCCTGCCCCGTTTTATTGTAATGTAGGACCGCTTTTGGCATCCAGAGGACCAGCCACATAGCCCGAAAGAGAGATGCTGCTTTTCCAGAACGGTGCCGAAGTATATTGATGACAGCGTCACGTGGTAGATGTTACTTTCTTACTCGCTGGTCAGTTTGGACGAATCACAGTTGCTCGTGATTACATCCTAAAGCGTTCTTACAAATCATTGCTGGAGGAGATTTTCATTTTATCATTGATATTATTTCAGGTACAAATTAACAGATTCAAACGATTAGGCTTTTTAGTGTGAAAATATCTCCAGTAATGGAAAAAACGTCTTGAGATTTGAATGCGGATCAATGGACGGTTAAACTTTTTGAGCCAGTAAAGCGTCCCCTAGAGGAAGACGACGTTTTGTTTCATTTTTTCATCAAACATATGCCTCTTAATCCTAGAAACTCGTGTGTTCATGCTAACGTAAACGTAAACGACACAGAGCGACAGCAATAAGTACTGAAGTATTGGACAGTTTACATTGACTACAAGGTGCTATCCGATTAAATGGAGTCAGAAAGTGCGGGTGTGGAGCAGTCATTGGTTCCTGAGGATGAACCAGCCCCACAGTCTGTGTCGGTTGAGACTGAAAAGGACAACTCAAGCCATGATACTGAGATTAGCAGTAAAGACACTTCCCAGAAGGCCGCTCAGGTGCAGCAACTGTGCCGTTTTTACTCTCAGGGCAGGCGATGCTATTACGGGAAAAGGTGCCGCTTTCTTCATCAGAGAGCTGAAGGTCCAATGAAAGAAGGAGAGAATGGTACAGCTCACAAGGAGAAAGAAGGAAACGTGGATGGTCAAGCATCAGACCCACAGCAGCAGTCGAGTGAAAACGGCCAATCTGGTTCAGAGAAACATCCGCCTCCGTCCAGCCGCAGAACTGCTCCCATGAAGCAGGACAGACCCAGGCGTCCCTGCCGCTACTTTCTGTCTGGGTTTTGTGCAATGGAGGACCGGTGTCGCTTTTTGCATCCACAGCAGTTTCCGTCCGTGGAGGACCAGCCTCACGGCCCGAGAGAGAGGAGCAGCTTCAGGCCTTCCGCTCCAGCCGCACGATCAGCTAAAAGTCATGAGCAGGTCAAACTGGCTGATCTTACTGAAGAGGTCTGCAAGGAGCTGAGAGCCACTGAGATCGCTCAGCTGATCAAGAGATTTCCGAAAGAAAATCTCATCGTGCAGGAGAGAGAAGATGGACAGCTGACCTACTACAGAGTCACGGTTCAAGCCACGGACCCTGACTGGCCATTTGACCTTAACGAAGTGGACATCATGGTCAGCTTTCCTGAGAGTTACCCTCAAGAGGTTTTCACTGTGGATATCCCTGAGGACCAGGACTTACCATCACTTATGGGGAGACATGTGCAGAAGGCCTCAGAGGAATGGCTGAGGGCTAAACATGCCACTAATCAGCTGATGGGCAGAGTTGAGCTGCTCTTCAGGCCGTACTTGCGCTGGCTGGACCGTAGTATGGAGAAACTCTTCACTGATGGAGCCAGACAGTTGAAAAAAGACGTTGACCTTGAGAGGGCTGGAATACAGTTTGTTCCCTATGAACAACTCAAGGATGAAACTGCTCTCGGTATTGATGGGGAGGAAGGTGGCCACCAGGTGGAGAACGTAAAAACAAGAGAGCGACGAAGAGGTACTGAAATGAAACTGCTGGGTCTGAAACTGGGAGAACAAACAGCTACTGTGGCGGCCAGACAGATCTCAGTGTCCCTGAGGTGCAACAGGTGTAAAGAGGACTCTGACCTGACCCTGAGCGGGCGTCTACCCTATACTGCTATGTGTGAGAATTGTGGAGCAGATATCAGGGCGGCCTTCAGACCTAGTATGATTCACCACTACAGTGATGTTTTGGGCTATCTGGACATTAACTCAGCTGTGCCTGTAGACCTGGTACTGCAGGACTCCGAGTTCAGTATTGGTTGCCTTAACTGCAACAAGGAGGACACAATTCAGAATCTGACCTATGGGCAAAACTGGGAACAAAACTGCCAACATTGTCATACCAAACTCAGAATTTTTGTGGAAGCGACACAATTTCAGTTCATCCAGCCACAGACCAGAAATCAAACAGGTGGAGCTCCTAAATACACTCGACGTTACAGAGACCCTGCAGTTCAGCAAGGGAAACCCCTACCTGATAAAGGTGTCTGCAGGCATTTCAGACAAAGTCACCGGTGGCTAAGATTTCCATGCTGCGGTCGGGCGTACCCATGTGATGTGTGCCATGATGAAGATCAGGACCATCTGATGGAGCTGGCCAACAGAATGATCTGCGGTTATTGTGCCAAAGAGCAGCCATACAGTAACGGTAAGCCGTGTGTTGGTTGCGGAAGTATGATGACAAGAGCCACCTTCACAAGCCACTGGGAGGGCGGACAGGGCTGTAGAAACAAGGCTAAGATGAGCAGGAATGACCGGCACAAATACACCAACACACGTAAAACGGTGGCAAGGAAAAAAAGTGAATAATGATACCAAAGGATCTTATTTTCAACCAATCAGATGATTCATGGCCAGGTCCCCAATTAAGTCATTTATGAGACATCTTTAGATTTACTTTTCGGATGATTTTGCAAAATTGTTTTCTTGCAGTGATTTTTTTTTTTTTTTTTAAATAAAATACATTTAACAGATTTGACATATATTCAGCTTAACCATTTTCTCTTAGTAGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_00473761_00488628.mRNA True 2801 mRNA 0.47 13 473138 488832

Neighbor

gene id symbol gene type direction distance location
CI01000013_00441663_00456168 PSTPIP1A coding upstream 16682 441663 ~ 456456 (+)
CI01000013_00432775_00439564 RCN2 coding upstream 33559 432775 ~ 439579 (+)
CI01000013_00259782_00293697 MAP3K10 coding upstream 179441 259782 ~ 293697 (+)
CI01000013_00151644_00152374 SIX9 coding upstream 320042 151135 ~ 153096 (+)
CI01000013_00142867_00148461 SIX5 coding upstream 324130 142867 ~ 149008 (+)
CI01000013_00490680_00491519 CH25HL1.1 coding downstream 1784 490616 ~ 491630 (+)
CI01000013_00526975_00537006 SLC28A1 coding downstream 38143 526975 ~ 537074 (+)
CI01000013_00561825_00581324 NA coding downstream 72018 560823 ~ 581576 (+)
CI01000013_00657437_00692874 FRMD5 coding downstream 168605 657437 ~ 692874 (+)
CI01000013_00849127_00850710 ANKRD34C coding downstream 359758 848590 ~ 850969 (+)
G77502 NA non-coding upstream 15265 457325 ~ 457873 (+)
G77519 NA non-coding upstream 16025 456881 ~ 457113 (+)
G77510 NA non-coding upstream 71483 400617 ~ 401655 (+)
G77636 NA non-coding upstream 100730 372053 ~ 372408 (+)
G77635 NA non-coding upstream 101194 371571 ~ 371944 (+)
G77540 NA non-coding downstream 19720 508552 ~ 511252 (+)
G77518 NA non-coding downstream 23319 512151 ~ 512902 (+)
G77530 NA non-coding downstream 128085 616917 ~ 634839 (+)
G77509 NA non-coding downstream 209207 698039 ~ 702077 (+)
G77533 NA other downstream 220001 708833 ~ 709549 (+)
G77695 NA other downstream 457689 946521 ~ 952969 (+)
G79309 NA other downstream 1977933 2466765 ~ 2467171 (+)
G80062 NA other downstream 3095176 3584008 ~ 3584784 (+)
CI01000013_04051081_04064651 NA other downstream 3576101 4050837 ~ 4065829 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00007778 NA coding CM030123.1 CM030123.1 29379044 ~ 29386305 (-)