CI01000013_00526975_00537006 (SLC28A1)


Basic Information

Item Value
gene id CI01000013_00526975_00537006
gene name SLC28A1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 526975 ~ 537074 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_00526975_00537006.mRNA
CGGACAAAGAAGATTTAAAGTTGACAACCATCTCGTATGGGAATGAACAAGGTGTGGACAATCCAGCATTTGTGAAGATCTTTAGCTATTTATTCATTGTTTACCACAGCAAAGCATGCATACCCATCACGGCCACAGAGATCTTCTGCAAGACACACTCCAAAATAATCAAATACATTGCATTGGGAATCTTTGCTGCAGGTTATTTGGCATACTTCATTGCTGCATGTTATTTGGACTTCCAGAGGGCAATTGCTCTGGTTGTCCTCACTTGTCTGGGGGTGTTCATCGCCGTGTGCGAAATAATATTTCTGGACTACACAAAAGCCGGTTCAAGATTTGTGTTTGGAGACCTCATCGAAAACATATTTGCTTTCCAGGCTCTGCCTATAGTGGTGTTCTTCAGCAGTGTGATGTCAGTGCTGTACTACATTGGGGTGATGCAGTGGGTCATCACAAAGATTTCCTGGGTAATGCAGGTAACGATGGGAACCTCCTCTACAGAGACTCTCAGTGTGGCAGGGAACATTTTTGTTGGTCAGACAGAGGCGCCCCTCCTGATTCGTCCTTATTTGAAGGACATGACCAAATCTGAGATTCATGCTGTCATGACTGGAGGATTTGCCACCATTGCTGGGAGTGTTATGGGGGCATTCATCTCATTTGGGATTGATGCCTCCTCTCTGATTTCTGCATCGGTGATGGCTGCCCCATGTGCTTTAGCCATCTCCAAACTTTCCTACCCTGAAACTGAAAAGAGCAAGTTCACATCTAAAAGTCAAATTAAAGTTGACAGTGGTGGTGAGCAGAATGTCTTGGAAGCTGTCAGCAGTGGCGCATCTGCATCTATTGGGCTTGTGGCCAACATCGCTGCTAACCTGATTGCTTTTCTCGCCATTTTGGACTTCATAAATGCTATTCTCAGATGGTTGGGAGGCATGGTGGGATACTCAGATGTCAGTTTTGAGTTGATCTGCTCCTACGTGTTTATGCCGGTGGCCTTTATGATGGGAATTCCATATGACGAGTCTTTTAAAGTGGCTGAACTTATTGGCACTAAACTCTTCCTCAATGAGTTTATAGCCTATGAGAAGCTGTCAGAGCTCAAAAGCAACAGACTTAATGGCATTTTAGAAGATGGTGCAACTAAAAATTGGATCTCAATTCGATCAGAAATCATCTGCACCTATGCCTTGTGTGGCTTTGCTAATTTCAGCTCTCTTGGTATTGTGATTGGAGGCCTGTCCTCTATTTGTCCACAAAAGAAGGGTGTCATATCTGCTTTAGTGCTCAGAGCCTTGTTCACAGGCACATGTGTTTCCCTGATCAATGCCTGTATTGCTGGTATCCTTTATGTCCCTCCACTGGACTGTGCGGGTCTGTTTCAAAACACAGTCTTCAATACCACTGTGCCAAACATTAAAACTTGCTGTTATGATCTTTTTAAAAGCAGCACTATCAACAATGAAACAATTTCTTTCGAGGGTACCTGGAGTGGAGTGAAAAATGCCACAATTTATTTTGCTAACTGCTGTGGTCTCTATGACGCACCTGTGTGCATGTAGTTTGGCCAAGAGGTAACAATACAACAATGCAGAAAACACATCTCAACTAACTATAATGACTTTATTTA

Function

symbol description
slc28a1 Predicted to enable nucleoside:sodium symporter activity. Predicted to be involved in nucleoside transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human SLC28A1 (solute carrier family 28 member 1).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006810 transport biological_process

KEGG:

id description
K11536 SLC28A; pyrimidine nucleoside transport protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_00526975_00537006.mRNA True 1633 mRNA 0.43 14 526975 537074

Neighbor

gene id symbol gene type direction distance location
CI01000013_00490680_00491519 CH25HL1.1 coding upstream 35345 490616 ~ 491630 (+)
CI01000013_00473761_00488628 NA coding upstream 38143 473138 ~ 488832 (+)
CI01000013_00441663_00456168 PSTPIP1A coding upstream 70519 441663 ~ 456456 (+)
CI01000013_00432775_00439564 RCN2 coding upstream 87396 432775 ~ 439579 (+)
CI01000013_00259782_00293697 MAP3K10 coding upstream 233278 259782 ~ 293697 (+)
CI01000013_00561825_00581324 NA coding downstream 23776 560823 ~ 581576 (+)
CI01000013_00657437_00692874 FRMD5 coding downstream 120363 657437 ~ 692874 (+)
CI01000013_00849127_00850710 ANKRD34C coding downstream 311516 848590 ~ 850969 (+)
CI01000013_00862608_00869073 IDH2, IDHP, IDH2.S coding downstream 325344 862418 ~ 869073 (+)
CI01000013_00870861_00871425 IDH2 coding downstream 333787 870861 ~ 871522 (+)
G77518 NA non-coding upstream 14073 512151 ~ 512902 (+)
G77540 NA non-coding upstream 15723 508552 ~ 511252 (+)
G77502 NA non-coding upstream 69102 457325 ~ 457873 (+)
G77519 NA non-coding upstream 69862 456881 ~ 457113 (+)
G77510 NA non-coding upstream 125320 400617 ~ 401655 (+)
G77530 NA non-coding downstream 79843 616917 ~ 634839 (+)
G77509 NA non-coding downstream 160965 698039 ~ 702077 (+)
G77528 NA non-coding downstream 169469 706543 ~ 707255 (+)
G77536 NA non-coding downstream 173042 710116 ~ 710507 (+)
G77533 NA other downstream 171759 708833 ~ 709549 (+)
G77695 NA other downstream 409447 946521 ~ 952969 (+)
G79309 NA other downstream 1929691 2466765 ~ 2467171 (+)
G80062 NA other downstream 3046934 3584008 ~ 3584784 (+)
CI01000013_04051081_04064651 NA other downstream 3527859 4050837 ~ 4065829 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_012829 slc28a1 coding NC_007129.7 CM002902.2 26829086 ~ 26850069 (+)