CI01000013_00711849_00714655 (CTSH)


Basic Information

Item Value
gene id CI01000013_00711849_00714655
gene name CTSH
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 711496 ~ 715089 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_00711849_00714655.mRNA
ATTTATGTAATCAATTAGCCTATGTGGTTAAATACAGTACACGACAGAGATTTGTGACATAAATCATCTAAATGATACTTTTCATGTACACAATATAGAGTCACTGGCTTATGTTTACTAGTAGTAACTCACTTGCTTGACACTGGTCATGTGATGTCAACGCTGCAGCTCCTGAGGGGGCGACCCGCTCCATGTAGCGAACTATAATAAAACGGCTTTATCTGTGTGCACTTCATTTTACTGATATATATAAAAAATGTTGTTAATTTATTTGTGTAAAACGCTTAATTAGCGAAACAATATTGAGTGCACCTTTAACCCGTAGACCAGAGGACGATCGAAGCCCTCCCTCGTGTAGGAGGAGTGCTGAAGCGCTCATGTGATGAGATCTCATATATTCTCGCTAGTGTTATGAGTTGCTCGCGGGGGTGAAGATGAACAGGTTGATTTTGCCGGTGCTGCTTGCGGTTGTCTGTCAGGTACAAACAGTGCCTTTGCACACTGAGGAAGTGGGACTTAACCAGTTTTCAGACATGACCTTTGCTGAATTTAAGAAGTCCTACCTCCTGACAGAGCCTCAGAACTGCTCAGCCACTAGAGGGAATCATCTGAGCAGTAATGGTCCTTATCCTGATATGATTGACTGGAGAACCAAAGGACACTATGTAACTGATGTCAAGAATCAGGCAGAGCAGCAGCTTGTAGACTGCGCAGGTGCTTTCAACAATCATGGCTGCAACGGTGGCCTCCCAAGTCAAGCCTTTGAGTACATCATGTACAACAAAGGTCTCATGACAGAAGACGATTACCCCTACACGGCTAGGGATGGTGAATGCAGATTCAAACCACAGCTGGCTGCTGCTTTTGTGAAGGAGGTTGTAAACATCACAAAGTATGATGAAATGGGCATGGTGGATGCTGTGGCCAGGCTGAACCCTGTCAGCTTTGCATATGAGGTTTCAAGTGATTTCATGCACTACAGAGATGGAATATATACCAGGTAGGGATGAAATATTATAATAAATTAGTGCTGTCAAATTGATTAATTGTGATTAATCGCATCTAACATAAAAATTTGTAAATATATAATATATGTGTTTGTGTGTGTATATATATATTTGACAGCATTATAATAAATAAAAAAATTTTCTGTATTTATTTGTGACAGTTCATGGCAGTTTCTGTAATATGACTATTTTATAGCACTGAATGTCACAACACTACTGACATGGTGAACCATGCAGTGCTTGCTGTGGGTTATGCTCAGGAGAACGGAACTCCGTACTGGATAGTGAAGAACTCCTGGGGAACCAACTGGGGAATTAAAGGGTCTGTTTGCATGACTTTATCAAATAAA

Function

symbol description
ctsh Predicted to enable cysteine-type endopeptidase activity. Predicted to be involved in proteolysis involved in cellular protein catabolic process. Predicted to act upstream of or within proteolysis. Predicted to be active in extracellular space and lysosome. Orthologous to human CTSH (cathepsin H).

NR:

description
Cathepsin H precursor

GO:

id name namespace
GO:0004177 aminopeptidase activity molecular_function

KEGG:

id description
K01366 CTSH; cathepsin H

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_00711849_00714655.mRNA True 1357 mRNA 0.41 7 711496 715089
Loading

Neighbor

gene id symbol gene type direction distance location
CI01000013_00698283_00710200 BLM coding downstream 445 698283 ~ 711051 (-)
CI01000013_00583295_00609148 NA coding downstream 101360 583234 ~ 610136 (-)
CI01000013_00537410_00556704 ALPK3, ALPK3A coding downstream 154196 537118 ~ 557300 (-)
CI01000013_00513362_00521860 ZNF592 coding downstream 189636 512048 ~ 521860 (-)
CI01000013_00508109_00511120 SEC11A, SC11A, SEC11C, BRAFLDRAFT_76762, SEC11C.L, SEC11A.L, MGC82823 coding downstream 200222 507868 ~ 511274 (-)
CI01000013_00717175_00764059 RASGRF1 coding upstream 2086 717175 ~ 764059 (-)
CI01000013_00857066_00859084 NA coding upstream 141622 856711 ~ 859204 (-)
CI01000013_00873450_00880028 ZNF710A, ZNF710 coding upstream 158139 873228 ~ 880042 (-)
CI01000013_00971329_00971942 NA coding upstream 255424 970513 ~ 972335 (-)
CI01000013_01029597_01029830 NA coding upstream 314450 1029539 ~ 1029830 (-)
G78493 NA non-coding downstream 31552 670630 ~ 679944 (-)
G78494 NA non-coding downstream 39589 671666 ~ 671907 (-)
G78469 NA non-coding downstream 104997 605915 ~ 606499 (-)
G78452 NA non-coding downstream 181912 529093 ~ 529584 (-)
G78510 NA non-coding upstream 52858 767947 ~ 768352 (-)
G78511 NA non-coding upstream 53579 768668 ~ 768895 (-)
G78513 NA non-coding upstream 54698 769787 ~ 770120 (-)
G78522 NA non-coding upstream 67568 782657 ~ 782912 (-)
G78523 NA non-coding upstream 68045 783134 ~ 783417 (-)
G78296 NA other downstream 684599 26528 ~ 26897 (-)
G79690 NA other upstream 2098158 2813247 ~ 2815392 (-)
G80262 NA other upstream 2850082 3565171 ~ 3567537 (-)
G80271 NA other upstream 3004344 3719433 ~ 3723607 (-)
G80399 NA other upstream 3188978 3904067 ~ 3906240 (-)
G80443 NA other upstream 3349853 4064942 ~ 4066017 (-)

Expression

CI01000013_00711849_00714655(CTSH) Expression in PRJCA010000

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 10.
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CI01000013_00711849_00714655(CTSH) Expression in each Bioproject

Bar chart with 44 bars.
CI01000013_00711849_00714655(CTSH) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1000.
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Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G182139 LOC106561173 unknown NC_048566.1 CM023220.2 73606892 ~ 73610237 (+)
eurasian perch (Perca fluviatilis) G152567 NA unknown NC_053126.1 CM020923.1 6719784 ~ 6720643 (-)