CI01000013_01007844_01029438 (SEMA4B, SEMA4BA)


Basic Information

Item Value
gene id CI01000013_01007844_01029438
gene name SEMA4B, SEMA4BA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 1007844 ~ 1029459 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_01007844_01029438.mRNA
CAGACTGGATTCGGTGGTAATAAGCCCTCCTGGTTGAGGGCTGATGCCCTATTATTACCGCATTGTCTCCCCCGGGACTCAGGAAGTGAGCGCAGACCTTCTGCAGCAGCTCCCAGAGACACGGCCGCTTTTAGAGTCTTACCTCAGCTCAAAGTCACCCACGGGAGTGTATTCAGTGTAATCATTACATGCTCTCTAAATGCAAACGAGAGGTCGGCCAAGAGATTTTCACCCGATGGAGTCTTCAATTACACCTCTCTGCTCCTCAGTAAAGAGGATAACATGCTGTACGTTGGCGCTCGAGAGACTCTCTTCGCACTCAATATCAGCGATATCAGCAGAACGCAGCTGCAGCGTAATTTAACATGGAGCACACCTCAGAGAAAGAGAGACGAGTGCAGTTTCAAAGGGAAAGACTTAAAGACCGATTGCTTCAATTACATCAAGATTTTACTGCGTGTGAACAGCACTCACCTGTACGTGTGTGGAACGTATGCTTTCAGCCCTATCTGCGCATACATCAACACGTCTGATTTTTCCCTGGTGCGCAGTGAAATGGGAGAAATAGTCACCGAAGATGGTCGAAGCCGGTGCCCTTTCAACCCTGAATACAAGTCCACGGCCATCATGGCTGATGGAGAACTGTATGCTGGCACGGTCAGTAACTTCCAAGGGAACGAACCCATCATTTACAAAAGCCTTGGCCAGGGCACAGCCTTAAAGACTGAAAACTCACTGAACTGGCTTCAAGACCCTGCTTTTGTGGGCTCAGCCTACATTCAGGAGAGTTTGCCCAAAGGCAACACAGTCGGCGATGATGATAAGATTTACTTCTTCTTCAGTGAAGCGGGAAAGGAGTTCGATTTCTTTGACAACACCATTGTGTCACGCATCGCTCGCGTGTGTAAGGGTGATAAAGGTGGAGAGAGGGTTCTTCAAAAGAAATGGACAACCTTTCTGAAAGCCCAGCTCCTGTGTTCATTACCGGATGATGGGTTCCCCTTCAACATCATTCAGGACATGTTTGTATTGACCCCCAGCAAAGAGGCCTGGAAGAGTACTGTGTTTTATGGAGTCTTCACCTCACAGTGGTACAAAGGTGCTTCAGGCAGCTCAGCTGTATGCGCGTTTACCATGGACCAGGTTGAAGAGGCGTTTAATGGACGTTACCGGGAAGTTAATCGAGAGACGCAGCAGTGGTACACCTACAACCACCAAGTACCAGAACCCAGACCTGGAGCATGCATCACCAACGCGGCCCGTGCCCAAGGGATCTCCTCCTCTCTGCACATGCCTGATAAAGTGCTGAACTTTGTGAAGGACCACTTCCTCATGGATAGCATGATTCGCAGTCAGCCTCTGCTCCTCAAACGAAATGTGCGCTACACCCAGCTCGCTGTGCATCGAGTACAGGCTCTTCACAATACCTACGATGTGCTCTTCATCGGCACAGATGACGGCAGGATTCACAAAGCCATCAACGTTAAGCACAAGATGTATATCATTGAAGAGCTGGTGATTTTCCCCGAGCCTCTTTCTGTACAACACATCGAACTGGATGATGAGAAGGGACTGTTGTTTGTGTCCAGCTATTCTGGGCTGGTTGAAATCCCTCTTGCCAACTGCTCCAACTACCAGAGCTGTGGAGAGTGTGTGCTTTCTAGAGATCCTTACTGTGCCTGGACAGGGAAGCAGTGTTCGAATATTAAACATGCTCCAACTAAGAGCCAATGGCAACAAGATGTAGATGATGCCAACACTGCCATGTGCAAAACGACAATGCCAAGCCCCCGTTCTGCAAGACCGACTCCACCACGTGTTCCATCATGTCATGTGGTACAAATACCAGTCAACACATTTACGGTTCTACCCTGCAAGCTGCGATCCAACTTGGCTAAGAGGCGATGGGAGCACAATCATACCGACGAGCAATTCGTCTACACTCGTCCTGACGGCGGGCTGGTGGTTGTAGCCCAAGTGGATAGGGAGGAGATCTATAAATGTTGGTCCGAAGAAGGCGGCTACCAACAACTTCTGGCCGAATATTGCGTTAAAGCAGAGCAAGAAAGCACCACCCTGACTGGACGTTCCCGAACGCAGCTCGTGCCCCAAGGGGAGGCAATTATCCTGCCCGGGGAAACGTGGTCACCGCAGAAAACCAAAACGTACTGGAATGAATTGATTGTTGTGTGTGCCTTACTCGTGTTCTCCCTGGTGGTCCTGTCGCTGTTCGTGGCGTACAGGAACCGAGATAGGATGAAGTCCATGCTGAAGGAAGGCGAGTGCCCCAACATGCAACAGAAGAAGCCGCGAATTCCAGGGAAGCACACGGAAAGCCTTCCACTAAATGGCAACAATATCCCGCCCTCTGTGTCTGACCACAAGGGCTACCAGACGCTCAATGATAACTACATCTGCAGCACTCCAACTCACGAATGCTCCTCACCTGAGAACAGCAAGAGCTTCTCAGAATCCGAAAAGAGACCATTGAACTTAAAGGAGAGCCACGTGGAAATCTCCCCGACTTGCCCGCGGCCTCGAGTACGACTGGGCTCGGAAATCAAAGACTCGATCGTTTAAGTCTGTTTGGGATGACTGTTA

Function

symbol description
sema4ba Predicted to enable chemorepellent activity and semaphorin receptor binding activity. Predicted to be involved in several processes, including generation of neurons; neural crest cell migration; and semaphorin-plexin signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space. Predicted to be integral component of plasma membrane. Orthologous to human SEMA4B (semaphorin 4B).
sema4b Predicted to enable chemorepellent activity and semaphorin receptor binding activity. Predicted to be involved in several processes, including generation of neurons; neural crest cell migration; and semaphorin-plexin signaling pathway. Predicted to be located in plasma membrane. Predicted to be active in extracellular space. Predicted to be integral component of plasma membrane.

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0038191 neuropilin binding molecular_function

KEGG:

id description
K06521 SEMA4, CD100; semaphorin 4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_01007844_01029438.mRNA True 2601 mRNA 0.50 14 1007844 1029459

Neighbor

gene id symbol gene type direction distance location
CI01000013_00870861_00871425 IDH2 coding upstream 136322 870861 ~ 871522 (+)
CI01000013_00862608_00869073 IDH2, IDHP, IDH2.S coding upstream 138771 862418 ~ 869073 (+)
CI01000013_00849127_00850710 ANKRD34C coding upstream 156875 848590 ~ 850969 (+)
CI01000013_00657437_00692874 FRMD5 coding upstream 314970 657437 ~ 692874 (+)
CI01000013_00561825_00581324 NA coding upstream 426268 560823 ~ 581576 (+)
CI01000013_01036536_01049545 NA coding downstream 7077 1036536 ~ 1049882 (+)
CI01000013_01115756_01164524 NA coding downstream 86297 1115756 ~ 1166617 (+)
CI01000013_01220794_01229752 GNRHR4 coding downstream 191335 1220794 ~ 1230958 (+)
CI01000013_01275415_01295230 PLIN1 coding downstream 245663 1275122 ~ 1295324 (+)
CI01000013_01335438_01381270 SLCO3A1 coding downstream 305979 1335438 ~ 1381270 (+)
G77765 NA non-coding upstream 70387 937249 ~ 937457 (+)
G77747 NA non-coding upstream 98934 908597 ~ 908910 (+)
G77739 NA non-coding upstream 109894 897750 ~ 897950 (+)
G77736 NA non-coding upstream 114903 892664 ~ 892941 (+)
G77729 NA non-coding upstream 154314 851430 ~ 853530 (+)
G77800 NA non-coding downstream 44043 1073502 ~ 1073829 (+)
G77826 NA non-coding downstream 151743 1181202 ~ 1181428 (+)
G77829 NA non-coding downstream 157450 1186909 ~ 1187191 (+)
G77894 NA non-coding downstream 287792 1317251 ~ 1317663 (+)
G77695 NA other upstream 54875 946521 ~ 952969 (+)
G77533 NA other upstream 298295 708833 ~ 709549 (+)
G79309 NA other downstream 1437306 2466765 ~ 2467171 (+)
G80062 NA other downstream 2554549 3584008 ~ 3584784 (+)
CI01000013_04051081_04064651 NA other downstream 3035474 4050837 ~ 4065829 (+)
G80845 NA other downstream 3805619 4835078 ~ 4836232 (+)
CI01000013_06050285_06059640 NA other downstream 5026839 6049864 ~ 6060269 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00007818 LOC106573467,LOC106561177 coding CM030123.1 CM030123.1 31270675 ~ 31302984 (+)