CI01000013_01036536_01049545


Basic Information

Item Value
gene id CI01000013_01036536_01049545
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 1036536 ~ 1049882 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_01036536_01049545.mRNA
GTGAAAAGATGAACCAAACTGACCTTCGGAGACTTTTTGCAGCTTGTGATGGGAATAAGTCAGGAAGAGTCGAGTACGAGGACTTCACCAATGTTTGCCGAGAGCTTAATGTCCCTGCGGACGAGATCAGGACTTTATTCAACAAGTTCGACCTGGATGGAGACGGATATATTAATTTTAATGATTTTTCGTCAAGCTTTCAGGAAGTTTCCGAAGCCCTCAATCTGGCTTCGTTGGAAAACGGTTTGCAAAGTCAGAGAAGCGCTTGGGATGAGTTTGAAAACACATTAGACGGAGATGTGGCCTTTTATTTGGGAAGGCAGTGGGATGGATTGAGTGAGTTGTATGAACAAATCCACTCCACATCAGATGAGCTCTTACTGCAGCAATATGAGGATCTCATCAGGGCCTTTGTGGCTGAGAGCAAAGAGCACAGGATGGAGAGTGAACAACTCGAGACCAGTCTTCGAAGGACGGAGGAACTGACCAGCAGTCAGTTAGCAGAGATGGAGGAGGACTTGCAGCAGCAACTGGCCCGCACCGAAGAAAGGGTCAGAGAAGAGGAACAGAAGAAATTGGATGAATCCATTGCTTTGCTCCAAATCAAGCATGAGAATGAGCTGGCAGACCTGCAAACAACAATAGAGAGGCTCACAAAGCAATATCAAGAGGAGTCGAAATTAAACAGCCCCAGAGAAGATGCCATCAAACTGAGAGCACAGATTAGAGATCTGATGCAGGAAAATGAGGAGCTGAGGAGTTCTCTTATGAAAGCCCAGATGAACGTCTCAATTCTCCAGCTTGAGTTGGACAGATTGAAGAACGCCTTCACTGACCAGAAACTCCAACACGAGAGGGAAATGAACAAAACATTGTATGACAGCAATGATGGGTTGCGCTCTGCTCTGAGCCAGGATAATTCCTCTACAAAAAGACGGACAGATGCCGAGCCGATGTCAGGCAGTGATTATGACAGTGAAGACAGCCATAATTCAGTAGAGACTGTGCATCATAGTTACTCTTCTATTCCATCTGAACTGGAGGTGTCAGAGCTGAAGTCTGAAGCGTTGGGATCTGTAGCTCGTAGCACAGCTGGCTCAATATCCTCCTCACTTCGGCGGCGCTTATCTGCTTTTCCTGTCAAGCAAACTGAAGAAGACTTGCATGACACGGAAGATCTCTCTCCAGTGTACCGTCTGGTGTTGGCTGGGGATGCCGGGTCGGGAAAATCCAGCTTTTTACTACGGTTGAGTCTTAATGAATTCAGAGGAGATATACCAACCACTCTTGGTGTTGATTTTCAAATCAAGAAGATGCTTGTAGATGGAGAGAAAACTAACCTTCAGATCTGGGACACTGCCGGACAGGAAAGGTTCCGCAGCATTGCCAGGTCATATTTCCGCAAAGCACATGGAGTGCTACTGCTGTACGATGTCACGTCTGAGAGCAGCTTCCTGAATGTTCGTGAATGGGTGGAACAGATTCGGGAGTCAACAGATGAGGACATCCCAATGTGTGTAATAGGGAACAAGGTGGATTTGAGAGCAGAGAGGCCAAAGGGAAGCTGTGTGAGCTCTTTCCACGGGGAAAAGCTTGCTATGGCTTATAATGCCATGTTCTGTGAAGCAAGCGCTAAAGAGGGGACGAACGTCGTTGAGGCCGTTTTACATTTAGCAAGAGAAGTAAAGAAACATGCAAAACTGGGGCGGAGGTCAGAGTCACAGGTTAAGCTGAATCTTCACAAACGGAGGAAGACGCTGAACAACTGCTGTGGAGTCTAAATCTTGCAGTGGGATCTGGTTTATATGTCTTAAATTTATTTTAATGTCAGTGCTTTGTAGTAAAGGTAACTTTTTAAATAATTACTGCACCTTATAAAATGACCTTTATTGGAAAAATGTTTTTTTTTTTTTAAGAATCAAGTTAATCACTTTTAAGCAATTTAGACATGTTTTGTATGTGTCCTTGGTGTTTTTAAGCACTGATCAAATGTATACTTGTACATTTGCTTACAAATGATCAATTCACTTCAGGGTTCAGTGTTTATTTAAACGTTTTTATTTGTTATAACTGAATTGTGTCGAAGGATGTTCATGTAAGTTTTTCTAACATTGTTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_01036536_01049545.mRNA True 2118 mRNA 0.44 15 1036536 1049882

Neighbor

gene id symbol gene type direction distance location
CI01000013_01007844_01029438 SEMA4B, SEMA4BA coding upstream 7077 1007844 ~ 1029459 (+)
CI01000013_00870861_00871425 IDH2 coding upstream 165014 870861 ~ 871522 (+)
CI01000013_00862608_00869073 IDH2, IDHP, IDH2.S coding upstream 167463 862418 ~ 869073 (+)
CI01000013_00849127_00850710 ANKRD34C coding upstream 185567 848590 ~ 850969 (+)
CI01000013_00657437_00692874 FRMD5 coding upstream 343662 657437 ~ 692874 (+)
CI01000013_01115756_01164524 NA coding downstream 65874 1115756 ~ 1166617 (+)
CI01000013_01220794_01229752 GNRHR4 coding downstream 170912 1220794 ~ 1230958 (+)
CI01000013_01275415_01295230 PLIN1 coding downstream 225240 1275122 ~ 1295324 (+)
CI01000013_01335438_01381270 SLCO3A1 coding downstream 285556 1335438 ~ 1381270 (+)
CI01000013_01405290_01429838 NA coding downstream 355408 1405290 ~ 1430313 (+)
G77765 NA non-coding upstream 99079 937249 ~ 937457 (+)
G77747 NA non-coding upstream 127626 908597 ~ 908910 (+)
G77739 NA non-coding upstream 138586 897750 ~ 897950 (+)
G77736 NA non-coding upstream 143595 892664 ~ 892941 (+)
G77729 NA non-coding upstream 183006 851430 ~ 853530 (+)
G77800 NA non-coding downstream 23620 1073502 ~ 1073829 (+)
G77826 NA non-coding downstream 131320 1181202 ~ 1181428 (+)
G77829 NA non-coding downstream 137027 1186909 ~ 1187191 (+)
G77894 NA non-coding downstream 267369 1317251 ~ 1317663 (+)
G77695 NA other upstream 83567 946521 ~ 952969 (+)
G77533 NA other upstream 326987 708833 ~ 709549 (+)
G79309 NA other downstream 1416883 2466765 ~ 2467171 (+)
G80062 NA other downstream 2534126 3584008 ~ 3584784 (+)
CI01000013_04051081_04064651 NA other downstream 3015051 4050837 ~ 4065829 (+)
G80845 NA other downstream 3785196 4835078 ~ 4836232 (+)
CI01000013_06050285_06059640 NA other downstream 5006416 6049864 ~ 6060269 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location