CI01000013_01275415_01295230 (PLIN1)


Basic Information

Item Value
gene id CI01000013_01275415_01295230
gene name PLIN1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 1275122 ~ 1295324 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_01275415_01295230.mRNA
CAATAAAAACACATTTACATAATTTAGGGAGAGATTTTGAAATCATGACAGGGTTGCCAGGGTTCAGTGGGGTGTAGTTCATTTCAGACTCAGAGTATCACTGTGATTGGTTGATGACAGTCTTATATACTGAGCTTCACTGTGAGATTACTAGACTCGCACATGCTTTAGAATGCAGCAGTCGCCTACTCATGGTCTAATAATTCTGTCACGAGATGTTTGTGTACATGTGGGATTAGACCAGCTGAAGTTTCTCTCCACGTATTTCACCAGCTCATTGAAGGCTATTGGAGATGGCATCTGAAAAAAAGGACACCGGTGAAGTTTTAAAGGATCAGAATGTATTTCTTCGAATCCTCAATCTTCGATCTGTCAATGCTGCTCTCGAATCCATTGAGAAGATGTACATCAGTACGAAACAGTCTCATCCCATCATAAGGTCTGTGTGTGGGCTGTATGAGAAAGGTGTGAGTAGGGCTGGCAGCTTGGCTTTATGGAGCATGCAACCTGCCCTCCATGTACTGGAGCCCCAACTTATAGCAGCCAACTCAATGGCCTGCAGAGGACTGGACCGCCTGGAGGAGAAGGTACCAGCCTTGCAGTCTCCACCTGCAGAGCTGACAGCAAATATCAAGGAGCTGATGTCTTCAACTTTGGAAACTGCCAAGGACGGTATCACCGGTCCAATCAAACACACCTCTAACGTTGTGTTGGGCAAGGTATCTACTGGGTACCAGCAGAGCAAGAATGCTATAAGTAACGGCATACAGTATGTCCTTAACAGCAAACTTGTATACCTGGCCGAGCAGAGAGCCAACAGGGCTCTAAGTGTGACAGAGAACCTGTTCGAATATGTCCTTCCTGTATCTTCAGCTGAAACAGAGGATGATGGGAGTATGGGAGAGCAGGCGCCTGATGTTGGAGCCTCTGGCCCAAAGCCCAGCTTCAGTAGGCTGAGAGAGCTGGCCGGCACCATCTGCAGACGTGCCTTTGAGAAGACAGCTGCACAGCTTCAGCGCTCCAAACGTCAAGGTCAGGAACTGGTCACACAGATCCCTGGCGTGAGTCCCCTGGTTGAATATACCATGAAGACAATGAAGACTTTAGGAGGTGTAATACTGGGACTCCCGAGCTCTGTGGCAGCATTTCTGAAAGATGGACAACAGCACAGTCCTCAGAATGAGGTGACCAATAATGAACATGAGCAGCTCGAGAGTAATGGGCTGCCAAGTCTAGTCAGTGGATTAGGGCAGCAGTTGCTTAAGGTCTATGAATCTGTGGTGGCTAATGTAGAGAAAACCCCTCAAACCAATTTCAACCTGGCTAAGGATGGAGTCAACATTGTCCTGGGTTACCTTGGCACAGTCAGGGAGAGAGCACTGCACAACCTTTCTTATTATGGGCTGAGAGTCAGTGGCAAACATGTAGGTAATGACAATGCCAGACAGCCACGCATATCCGAGAAGTCAGCTGACATGGAGACAAATAGTTTATATCATGACGAAACACTTCGCCCTGGCACTCTGCCAGGACTCCAGACCTGTTGGATCCTCCCCAGCTCAACCCTCCTATCCCTCCCTGGTCATCTGCCTGGGCTCCGGACCTTCCAGAGACTTCATGGGCAGTTCTCCCATCCTTGTCTCTGTAAATTAGGCATTATGATCTTATCCTCTATAGATATCTGGGTTGTTTTGTCTGAGAGTTTCTTTGTTTTTGTTCATGAGGTTACCTGTAGAAGTGAGAGGATTCCTAGACGATCTTCCAAGCCAGAAGGACGTTCCCAACTGGTTGGAAAAGATGGAGCAGAAGAATGTCTGAGTGGCTCCCTGGTGCTGGAGTCCAATGTAGGAGACCACATGCACCGTCCCAGTGACAACTCTGAAAAGCAGCCTCTTAAGACTACAGAGCCCAAAGAGATATCGGAGGAGACCCGTCAGCTGAAGAAGAAGGTCATGAAGCAGATTCCCGTGCAGCAGAAAGTAGTTCTTGGAGGTAGCAACAAGAAATTATCCAACCACATGTCTTCTAGGAAGAGTCTGACAGATTGCACCCAGATTTCCTCCTCCTCTTCTAACACTTGCACAGTGCAAAACAGCAGGAACGCTGAGTGAGAAAGGAGCGTTGATTTCTAACGTCTCAAGTCAGTGACCTACATATAGTTATACATATGGAGGCTCTGAACTGTTTTGGCATTTCTTGTCTATA

Function

symbol description
plin1 Predicted to be involved in lipid storage and positive regulation of sequestering of triglyceride. Predicted to be active in cytosol and lipid droplet. Human ortholog(s) of this gene implicated in familial partial lipodystrophy type 4 and obesity. Orthologous to human PLIN1 (perilipin 1).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_01275415_01295230.mRNA True 2205 mRNA 0.48 11 1275122 1295324

Neighbor

gene id symbol gene type direction distance location
CI01000013_01220794_01229752 GNRHR4 coding upstream 44164 1220794 ~ 1230958 (+)
CI01000013_01115756_01164524 NA coding upstream 110598 1115756 ~ 1166617 (+)
CI01000013_01036536_01049545 NA coding upstream 225240 1036536 ~ 1049882 (+)
CI01000013_01007844_01029438 SEMA4B, SEMA4BA coding upstream 245663 1007844 ~ 1029459 (+)
CI01000013_00870861_00871425 IDH2 coding upstream 403600 870861 ~ 871522 (+)
CI01000013_01335438_01381270 SLCO3A1 coding downstream 40114 1335438 ~ 1381270 (+)
CI01000013_01405290_01429838 NA coding downstream 109966 1405290 ~ 1430313 (+)
CI01000013_01443540_01469011 CHD2 coding downstream 148216 1443540 ~ 1469076 (+)
CI01000013_01629280_01635701 NA coding downstream 333904 1629228 ~ 1635772 (+)
CI01000013_01762491_01764612 NA coding downstream 466434 1761758 ~ 1764805 (+)
G77829 NA non-coding upstream 87931 1186909 ~ 1187191 (+)
G77826 NA non-coding upstream 93694 1181202 ~ 1181428 (+)
G77800 NA non-coding upstream 201293 1073502 ~ 1073829 (+)
G77765 NA non-coding upstream 337665 937249 ~ 937457 (+)
G77894 NA non-coding downstream 21927 1317251 ~ 1317663 (+)
G77895 NA non-coding downstream 22397 1317721 ~ 1317963 (+)
G77875 NA non-coding downstream 175496 1470820 ~ 1471360 (+)
G77918 NA non-coding downstream 189150 1484474 ~ 1484721 (+)
G77695 NA other upstream 322153 946521 ~ 952969 (+)
G77533 NA other upstream 565573 708833 ~ 709549 (+)
G79309 NA other downstream 1171441 2466765 ~ 2467171 (+)
G80062 NA other downstream 2288684 3584008 ~ 3584784 (+)
CI01000013_04051081_04064651 NA other downstream 2769609 4050837 ~ 4065829 (+)
G80845 NA other downstream 3539754 4835078 ~ 4836232 (+)
CI01000013_06050285_06059640 NA other downstream 4760974 6049864 ~ 6060269 (+)

Expression


Co-expression Network