CI01000013_01335438_01381270 (SLCO3A1)


Basic Information

Item Value
gene id CI01000013_01335438_01381270
gene name SLCO3A1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 1335438 ~ 1381270 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_01335438_01381270.mRNA
GTGAGCGTGCTGACCACACTGGAGCGGCGCTTCAATCTTCAGAGCGCTGATGTGGGCGTCATTGCCAGCAGCTTTGAGATCGGCAACCTGGCCCTCATTCTCTTCGTTAGTTATTTTGGTGCTAAGGCCCACCGTCCTCGGTTAATTGGCTGCGGAGGCATTGTCATGGCTTTGGGAGCGCTACTCTCCGCATTACCTGAATTTCTCACCAGTCAGTACATGATAACAGACTCATGGAGCAAGGATCAGGAGCGAGACATGTGCTCCAACACCTCTAAAGCTGATGAACCGTGTGGGAATAGAGCCAACACCAACATGATGTACCTGCTTCTGATTGGAGCCCAGGTGCTGCTGGGTATTGGTGCAACGCCTGTTCAGCCCCTGGGTGTGTCCTATATAGATGATCATGTGCGGAAGAAAGACTCCTCTCTCTATATAGGTATACTCTTTTCCACACTAGTGTTTGGACCTGCATGTGGTTTCATCCTGGGATCTGTCTGTACCAACTTTTATGTGGATGTTTTGCTCATCGACACAACTATGCTGAACATCACTCCTGATGACCCCCGCTGGATCGGTGCATGGTGGGGCGGCTTTCTCCTCTGCGGTGCCTTACTCTTCTTCTCGTCCCTGTTCATGTTTGGTTTCCCCCAGTCTCTGCCCTGCAAGGAGGTGGAGGGAGGTCTTGAGAGTGAACAGGCCATGCTGCCCTCATCTTTAGCCCAGGATTATGAGAAATCCAAGCCCAGCAATGGAGTCCTGCAGAACTACCAGCCCAACAGCAACAGCCTGTCCTGCTGCCAACAGCTCCGAGTTATTCCCAAGGTGACCAAGCACCTGCTGTCAAACCCAGTGTTCACATGTATCGTCTTAGCTGCCTGTATGGAGATTGCTGTTGTCGCCGGCTTTGCTGCCTTCCTGGGCAAATATTTGGAGCAGCAGTTCAACCTCACCACCTCCTCTGCTAACCAGCTGTTGGGGATGACAGCCATCCCGTGTGCCTGTCTGGGCATATTTTTGGGAGGTTTGCTGGTGAAGAAGCTGAACCTGTCTGCTCTGGGAGCCATACGAATGGCCATGCTGGTCAATCTGATCTCCACTGCCTGTTACGTGTCCTTCCTCTTCCTGGGCTGTGACACAGGACCTGTCGCTGGGGTGACCGTCGCCTATGGCAACGAGACACTGCAAGTAGGCCAGAAGCCGGAAGCCCCCTGCATGAGTCATTGCAACTGCTACACTTCATCCGTTAGCCCCGTTTGTGGCTCCAATGGTGTGACCTACTTGTCCTCCTGTTTCGCCGGCTGCACCAGAACCATCAGTCCTGGACTACCACCACCTCCTCGCTCTCAGAACCTGACGAGATGCGCATGCATCTCCGAATACAATGAGTTTGCCACGGCGGTGCCAGGAAAATGCCCGCGCCCCGGCTGCCAGGAAGCCTTCCTCACCTTCCTGTGTGTGATCTGTGCCTGCAGTATGATCGGAGCCATGGCCCAGACACCCTCTGTCATCATCCTCATCAGAACTGTGAGCCCAGAGCTGAAGTCATACGCCCTTGGAGTTCTTTTTCTGTTACTGCGGCTGTTAGGGTTCATTCCCCCTCCTTTGATATTTGGTGCGGGGATCGACTCCACATGCCTTTTCTGGAGCACCGAGTGTGGGGAGAAAGGTGCATGTCTGCTGTACGACAATGTGACCTACCGGCACCTGTACGTCAGCATGGCCATCGTCCTCAAGGTCGTGGCATTCCTCCTCTACACAACCACCTGGCAATGCTTGCGCAGAAACTACAAGAAATACATTAAAAACAATGAGGGATACCTTACGCCCACGGAAATGTTCTCGTCCAGCGTGAATCTGGACAGTCTCGGAAAGGACAGCAGCCAAAGCCAAGTCAACAGGACTAAATTTATATATAACCTGGAGGATCATGAGTGGTGTGAAAACATGGAGTCCGTTTTA

Function

symbol description
slco3a1 Predicted to enable sodium-independent organic anion transmembrane transporter activity. Predicted to be involved in prostaglandin transport and sodium-independent organic anion transport. Predicted to act upstream of or within ion transport and transmembrane transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including female organism; gill; liver; pleuroperitoneal region; and skeletal muscle. Orthologous to human SLCO3A1 (solute carrier organic anion transporter family member 3A1).

GO:

id name namespace
GO:0006810 transport biological_process

KEGG:

id description
K14353 SLCO3A; solute carrier organic anion transporter family, member 3A

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_01335438_01381270.mRNA True 1962 mRNA 0.53 9 1335438 1381270

Neighbor

gene id symbol gene type direction distance location
CI01000013_01275415_01295230 PLIN1 coding upstream 40114 1275122 ~ 1295324 (+)
CI01000013_01220794_01229752 GNRHR4 coding upstream 104480 1220794 ~ 1230958 (+)
CI01000013_01115756_01164524 NA coding upstream 170914 1115756 ~ 1166617 (+)
CI01000013_01036536_01049545 NA coding upstream 285556 1036536 ~ 1049882 (+)
CI01000013_01007844_01029438 SEMA4B, SEMA4BA coding upstream 305979 1007844 ~ 1029459 (+)
CI01000013_01405290_01429838 NA coding downstream 24020 1405290 ~ 1430313 (+)
CI01000013_01443540_01469011 CHD2 coding downstream 62270 1443540 ~ 1469076 (+)
CI01000013_01629280_01635701 NA coding downstream 247958 1629228 ~ 1635772 (+)
CI01000013_01762491_01764612 NA coding downstream 380488 1761758 ~ 1764805 (+)
CI01000013_01950237_01964249 NA coding downstream 568745 1950015 ~ 1964290 (+)
G77895 NA non-coding upstream 17475 1317721 ~ 1317963 (+)
G77894 NA non-coding upstream 17775 1317251 ~ 1317663 (+)
G77829 NA non-coding upstream 148247 1186909 ~ 1187191 (+)
G77826 NA non-coding upstream 154010 1181202 ~ 1181428 (+)
G77875 NA non-coding downstream 89550 1470820 ~ 1471360 (+)
G77918 NA non-coding downstream 103204 1484474 ~ 1484721 (+)
G77929 NA non-coding downstream 124613 1505883 ~ 1506110 (+)
G77946 NA non-coding downstream 149050 1530320 ~ 1530575 (+)
G77695 NA other upstream 382469 946521 ~ 952969 (+)
G77533 NA other upstream 625889 708833 ~ 709549 (+)
G79309 NA other downstream 1085495 2466765 ~ 2467171 (+)
G80062 NA other downstream 2202738 3584008 ~ 3584784 (+)
CI01000013_04051081_04064651 NA other downstream 2683663 4050837 ~ 4065829 (+)
G80845 NA other downstream 3453808 4835078 ~ 4836232 (+)
CI01000013_06050285_06059640 NA other downstream 4675028 6049864 ~ 6060269 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013443 slco3a1 coding NC_007129.7 CM002902.2 25073984 ~ 25177230 (-)