CI01000013_01405290_01429838


Basic Information

Item Value
gene id CI01000013_01405290_01429838
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 1405290 ~ 1430313 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_01405290_01429838.mRNA
GTGCAATCTAGCTCCAGTGGAGGAGTATTCAGCTGATGTGGGCCTGCGCACCAGTCTGGTGACTATGAACCCCTCCGTGGTCCAGCGTGCCTTTCAGGACCTGAACAGTGAGGAGTGGGTGCAGCGCTTCGTCCACAGGCTGCAGAGCCTCAGTGGGAGTGTGCTGTGGATCCCTGCCTTCATGGCTAAAGGAGGAGAGGAGCGAGTGGAGTGGGCCATCCGCCTCATTCTTCTGCATACCGTGAACGTCCGCACCGCCTTCCCCTCTCTGCGTCTGCTCCATGCCGTCAGAGGGTACTGGTTGACCAATCATGTCCAAATCAAGAGGCCCACCACCGGACTCCTGATGTACACCATGGCAACACGCTTTTGTGATGAGATCCACCTGTATGGCTTCTGGCCTTTCGCTCATGATCCTGACAGCAAACCGGTCAAGTATCACTACTACGACACGCTAACTTACCACTACACATCTAGAGCCAGTCCACATACAATGCCTTTGGAATTCAGAACTTTAAGTGCTCTTCACAGACAGGGGGCGCTGCGGCTGCACACGGGACCATTGTTGTCAATATGCCGGTGTAAAAAATTAGTATGTTTTCGGTCACTGAAATCAAAAGTTAGTTTACATACACAATCATGGATGCTGCGTTTCTTCTACCCAGAATGCTGCAGTGAGAGGAAGTTGTCTATGCTTACGCTGAAGCTCAGGGCTGTCCGTCCACTCGATCAGTATAACAGCACAGAGAGGACGAGGAGCGCACACAGGAGCGAAGAGACAGCGGTGAGGGGCGAAGATGGCGATGCGGCGCGGTCTGAGCGAGAAGACCTCATTAAAACGAAGAATGTCAACGAAGAGAATGGCGTCGACCTGCTCAGATGAAAGAGCAGATCGCAACGGTGAGAACATGGTAAGATTTCATTATAAATTTAACTTAGAAACGTGTTTGAGCGAGTGGTACAGACGCACCAATATGGTGGAAAAGGAGAGGGTTCGACGAGGTGTTGTAAAATGGCCATGATGGGGCCATTGCCAAGTACTGAAAAAAGGCATTCCGTCGATTTAATCGACGATTTTGAGGTAAAAACATCGTGAAATTGTTAGGAAAACAATGGATGGATATGTTGCAGGAAGACTGTGAAGATTTCAACTGGCAGCAACGAAGAGAAACAAGGATTTAACTGTCTACGCATTTTAAATTCGCTTTGTCCTTGAGAGGACAAAATGTCCTTGTAACATTCGAAAGCGGAAAAAATATATTATATTGAAATATTGTTGTGATAATGCACTAGTGGACGTATCATTTCCAGTCTCAACATTTTGATTGTCTTTTGTTGGTTTCAAATGTTTTCTTTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_01405290_01429838.mRNA False 1358 mRNA 0.48 3 1405290 1430313

Neighbor

gene id symbol gene type direction distance location
CI01000013_01335438_01381270 SLCO3A1 coding upstream 24020 1335438 ~ 1381270 (+)
CI01000013_01275415_01295230 PLIN1 coding upstream 109966 1275122 ~ 1295324 (+)
CI01000013_01220794_01229752 GNRHR4 coding upstream 174332 1220794 ~ 1230958 (+)
CI01000013_01115756_01164524 NA coding upstream 240766 1115756 ~ 1166617 (+)
CI01000013_01036536_01049545 NA coding upstream 355408 1036536 ~ 1049882 (+)
CI01000013_01443540_01469011 CHD2 coding downstream 13227 1443540 ~ 1469076 (+)
CI01000013_01629280_01635701 NA coding downstream 198915 1629228 ~ 1635772 (+)
CI01000013_01762491_01764612 NA coding downstream 331445 1761758 ~ 1764805 (+)
CI01000013_01950237_01964249 NA coding downstream 519702 1950015 ~ 1964290 (+)
CI01000013_01989323_01993472 NR2F2.L, NR2F2 coding downstream 558218 1988531 ~ 1994075 (+)
G77895 NA non-coding upstream 87327 1317721 ~ 1317963 (+)
G77894 NA non-coding upstream 87627 1317251 ~ 1317663 (+)
G77829 NA non-coding upstream 218099 1186909 ~ 1187191 (+)
G77826 NA non-coding upstream 223862 1181202 ~ 1181428 (+)
G77875 NA non-coding downstream 40507 1470820 ~ 1471360 (+)
G77918 NA non-coding downstream 54161 1484474 ~ 1484721 (+)
G77929 NA non-coding downstream 75570 1505883 ~ 1506110 (+)
G77946 NA non-coding downstream 100007 1530320 ~ 1530575 (+)
G78008 NA non-coding downstream 183196 1613509 ~ 1613776 (+)
G77695 NA other upstream 452321 946521 ~ 952969 (+)
G77533 NA other upstream 695741 708833 ~ 709549 (+)
G79309 NA other downstream 1036452 2466765 ~ 2467171 (+)
G80062 NA other downstream 2153695 3584008 ~ 3584784 (+)
CI01000013_04051081_04064651 NA other downstream 2634620 4050837 ~ 4065829 (+)
G80845 NA other downstream 3404765 4835078 ~ 4836232 (+)
CI01000013_06050285_06059640 NA other downstream 4625985 6049864 ~ 6060269 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013442 st8sia2 coding NC_007129.7 CM002902.2 25027495 ~ 25051846 (-)