CI01000013_01629280_01635701


Basic Information

Item Value
gene id CI01000013_01629280_01635701
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 1629228 ~ 1635772 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_01629280_01635701.mRNA
GAATAAAAATATCACATGATGAGTGTCTTCACGCACATCAACAACATAAACCATGTTGGAGATAAGTACTATTGCTGCTATGTACCTGTTGTGGAAGTCCCAAATACGCCAGAAAGCCAAACGCCAACGTGCACCATCCAGAGAATACACAGGAGATGTGACTGCAAAGATATTTGCTGCACAGATTGACTGCTTTATTCCATATGCCATGCCTGAGCAGCTTTTGCTGGAATCAGCCCCAGCTTCCCAGAACCCAAGGCCTCATGGAGGAATCTATGAAATTGCCCCTGATCTCAAAGCCCATCGCCTCACGACCCAACCTGCTGCTGTGCAACAATGCTCATATTCACAGCCTTCAGACAGCAAATTGCTTCTCTCATTCCTCACCACGCCCTGTGCTCTCAGCCACCTGCAAAACGAACCCTGCTGGAAATTTCACTACAAATTACCCTGTGTCTACTCAATCCCCCTGGGAGAAGAAAACCCCCTATTCTCTCCAGCGCCCGTAGTAATCATGCTTATCAAACACACATACATGCATAACAAAGAAAGGGGTGGTCCTGTCAGCCCCAGTCTGTGCTGCAGCAGCCGAGACACAGACGGAGAGAAGGCACAGGGCCAAAGCTATGGGGCCTGGAGCAGGATCACAGCAGAGAGTGTTTCTGTGAGCTGTGCCTGTGAGATGAAGCTTTCAGGTTGTGAGATCACATGGGACTGAGTCTAAGCAGCTGTTGAACAAACGCTAATACCATTTTTTTCTTTCTTCCTGGTCTTTTGATTTTTAACGCA
>TU88927
CCATGTTCAGTCACATATGATACCCTATTTTTTTTTTCTTTTTGTCTGCAAAGAGATACCTCAAAGGATCACTCTCTTGTTTTGATCTCTCTCTCTCTGCCACCTTTCCAGCTATGAAATTGCCCCTGATCTCAAAGCCCATCGCCTCACGACCCAACCTGCTGCTGTGCAACAATGCTCATATTCACAGCCTTCAGACAGCAAATTGCTTCTCTCATTCCTCACCACGCCCTGTGCTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_01629280_01635701.mRNA False 789 mRNA 0.48 4 1629228 1635772
TU88927 True 240 lncRNA 0.45 1 1634057 1634296

Neighbor

gene id symbol gene type direction distance location
CI01000013_01443540_01469011 CHD2 coding upstream 160152 1443540 ~ 1469076 (+)
CI01000013_01405290_01429838 NA coding upstream 198915 1405290 ~ 1430313 (+)
CI01000013_01335438_01381270 SLCO3A1 coding upstream 247958 1335438 ~ 1381270 (+)
CI01000013_01275415_01295230 PLIN1 coding upstream 333904 1275122 ~ 1295324 (+)
CI01000013_01220794_01229752 GNRHR4 coding upstream 398270 1220794 ~ 1230958 (+)
CI01000013_01762491_01764612 NA coding downstream 125986 1761758 ~ 1764805 (+)
CI01000013_01950237_01964249 NA coding downstream 314243 1950015 ~ 1964290 (+)
CI01000013_01989323_01993472 NR2F2.L, NR2F2 coding downstream 352759 1988531 ~ 1994075 (+)
CI01000013_02033469_02034368 NA coding downstream 397343 2033115 ~ 2034738 (+)
CI01000013_02081079_02127936 NA coding downstream 444894 2080666 ~ 2128269 (+)
G78010 NA non-coding upstream 9375 1619615 ~ 1619853 (+)
G77981 NA non-coding upstream 12224 1616704 ~ 1617004 (+)
G78008 NA non-coding upstream 15452 1613509 ~ 1613776 (+)
G77946 NA non-coding upstream 98653 1530320 ~ 1530575 (+)
G77929 NA non-coding upstream 123118 1505883 ~ 1506110 (+)
G78028 NA non-coding downstream 6797 1642569 ~ 1643119 (+)
G78032 NA non-coding downstream 14796 1650568 ~ 1650776 (+)
G78073 NA non-coding downstream 69621 1705393 ~ 1705660 (+)
G78124 NA non-coding downstream 151771 1787543 ~ 1787793 (+)
G78231 NA non-coding downstream 293708 1929480 ~ 1929832 (+)
G77695 NA other upstream 676259 946521 ~ 952969 (+)
G77533 NA other upstream 919679 708833 ~ 709549 (+)
G79309 NA other downstream 830993 2466765 ~ 2467171 (+)
G80062 NA other downstream 1948236 3584008 ~ 3584784 (+)
CI01000013_04051081_04064651 NA other downstream 2429161 4050837 ~ 4065829 (+)
G80845 NA other downstream 3199306 4835078 ~ 4836232 (+)
CI01000013_06050285_06059640 NA other downstream 4420526 6049864 ~ 6060269 (+)
G78020 NA non-coding upstream 1544 1632191 ~ 1632513 (+)
G78019 NA non-coding upstream 2054 1631803 ~ 1632003 (+)
G78017 NA non-coding upstream 2985 1630809 ~ 1631072 (+)

Expression


Co-expression Network