CI01000013_02409027_02409452


Basic Information

Item Value
gene id CI01000013_02409027_02409452
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 2407306 ~ 2409607 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_02409027_02409452.mRNA
GTATAAAAAATGCTGGTATTGTATCTTGCGCTTCAGAAGCGCTTGTCTTTGAGCTGAAAGCATTACAGACACTCATGTCATTCAACACTCATGAATGACAGATGATGTGTCATTATTCGATAACAGTTTCTTAAAACTACAAACACGGTTATGACAGAAAGCAATAATGTGGCATGAAAACAACATCACATTCAAAAACCACCTACTATGATATAAAAGAAAAACAACACGCCAAAAGGGATGTCGACTCAAAACAATACAAGCGCGGCATTATGGTTCCACTAAGACATGTTTCTCTCTTAAGGTGTGTCCACAATAACATCCAATGCTGATATCCTGAGCATGCGGATGCAGTTTGAAGCACATATCAGTGCCCACAGAGCAGTGGTAATGAGAGACAGTGGGGGGGTCGGCGGAACACAGGTGCAGACTGCGTCACTCCTCCGAGCCATCAGCCGTGCCTGTCTCTACCACACGTTCACACGAGCCCACCTCAGAAGCCACACTTGCTTACATGTACCCTCTGTGACATCACGTGATGCATGGAGGGCTGACAGAGAGGACTTTCACAAGCTTTTAAAAGTTCTTCTTTCCCATATGCTCTGTTTCACTTTCAGAAAGTAATTCAAAGACTTTTACTATATTAATCATGCAAAAGTGTACAAAGTATTTCCAAAAACATAATTATAATTGTGCAATTGAAAATTATCTATTCAGAGACAAGTGAAACAAGGGTGGAATTTAACTTCCTGACCCATGCAGCAAAGAAGAAAAAAAATTGTTGAAATTTGACAATTTGAACTTCCACTAAACATAATTGAAAAATGAAAAACAGGCAGTTCCTGATATACGTATACACACAAACACACACATATATGTTTACATACTTTTGGGGCAGCTTGTACTACAAAGCATATTGTATACATAAAAGAGTATTAACAACACATAAACAATTTATATTCACCATTCAAAAGTTTGGGGTTGGTAAGTTTTTTTGTTGTTGTTTGTTTGTTTTTTGTTTTGTTTTTTGTTTATGAATGTCTTTTATGCTCATCAAGGCTGCATTTATTTGATCAAAATACAGCAAAACAATAATATTGTGAAATATTATTTAGAAATCATTGAAATATGCTGATTTGAAGCATTTCTTATCACAGCTGAGAACAGAATAGAATAGAAAGTTAAAAAGTAGAAATAGGAATCTTTTGTAAACTTAAAAACGTGTTTGTTGTCACTTTTGATCAATTTAATGCACCCTTGCTGAATAAAAATATTAATTTCTTAAAATTATATATATATATTATAATATTACTGACCTCAAACTTTTTAAAAGCAGTGTACAATAAATAAATAAAATACAACTGATATTAAATAAACAAATAATTAATATTATTATAATAACCTATTTTTCCTCTTTTTATAACATATTTTGAATTGTTATATTAAACCAAAGAAAAGTGTTTGTCATTGCCAAAACCTCAAACATTTGGTTTCTTTGAAAATCTCAGGATATCATCTTTATGATACACCACACATTTGTAGGTTCTCAGCGAATTCATAAAAAACATTAAAAAAAAATGTCCCCAACAGAGGACAAAAATGATTTGCTGGATCCCAGGAGGATAAAGAGGCACTCTGATGACAAGTGCAACAACAGATAAAAGACATAATCCTGATCACAGTGGCACTTCAAGATAAACCCGTACTCATAGGAGTTCATAATGACGCTTGTGTCAAGGCTAATCGCTGACCCACAAAATGAGATAATCTACGTAACATGGGACTCCTGCCTATGCTGCCCTTTTAACCCTGAGAGGGCGGCGTGGTGGCAGGGTGAGGAGGCAGAGAGGAAGCGGATCAGTAGGGAAAGAGGATTAGCAGCTTTGGGCTGCTGCTCTGGCTCCAGGCTCACACCCGTGATGCCAAGGACCGAGCCACGGCCTAGAGCGAAGGGGACACCTGAAGCCAGGTTCTCACACATGACCGCATCTTCAAGAAGGGCGAAGGAGACAGGAAAGAGGTTGTCGATCCTTAAGCCGCTCTGCACTGTTCAGCAGCACATGTGCTGAGTGGACCGTATGGGGTGGCTTAACACCAGAGGTCACAGCCAAGGGCAGGGCAGTCGAAAGGTCAACATTAGCCGTTTCTTTAGACAACGCAGACAAAGCTTTCCTGTCGTGAAGCACTAAAGAAGTAGATCATTCACAGCAGATGGTATTTGCTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_02409027_02409452.mRNA True 2224 mRNA 0.38 2 2407306 2409607

Neighbor

gene id symbol gene type direction distance location
CI01000013_02386700_02394730 NA coding upstream 12010 2386348 ~ 2395296 (+)
CI01000013_02081079_02127936 NA coding upstream 279037 2080666 ~ 2128269 (+)
CI01000013_02033469_02034368 NA coding upstream 372568 2033115 ~ 2034738 (+)
CI01000013_01989323_01993472 NR2F2.L, NR2F2 coding upstream 413231 1988531 ~ 1994075 (+)
CI01000013_01950237_01964249 NA coding upstream 443016 1950015 ~ 1964290 (+)
CI01000013_02411870_02429950 NA coding downstream 820 2410427 ~ 2429957 (+)
CI01000013_02510121_02510417 NA coding downstream 100476 2510083 ~ 2513164 (+)
CI01000013_02528016_02529126 NA coding downstream 117841 2527448 ~ 2529246 (+)
CI01000013_02656037_02664145 HSF4 coding downstream 246430 2656037 ~ 2664398 (+)
CI01000013_02666598_02669821 NUDT21, CPSF5, NUDT21.L coding downstream 256991 2666598 ~ 2669821 (+)
G79185 NA non-coding upstream 22118 2371730 ~ 2385188 (+)
G79241 NA non-coding upstream 90363 2316730 ~ 2316943 (+)
G79232 NA non-coding upstream 103611 2303317 ~ 2303695 (+)
G79075 NA non-coding upstream 276555 2130518 ~ 2130751 (+)
G78265 NA non-coding upstream 427232 1979842 ~ 1980074 (+)
G79194 NA non-coding downstream 9914 2419521 ~ 2420107 (+)
G79290 NA non-coding downstream 26835 2436442 ~ 2436843 (+)
G79291 NA non-coding downstream 28041 2437648 ~ 2437854 (+)
G79303 NA non-coding downstream 47781 2457388 ~ 2457601 (+)
G79310 NA non-coding downstream 59276 2468883 ~ 2469113 (+)
G77695 NA other upstream 1454337 946521 ~ 952969 (+)
G77533 NA other upstream 1697757 708833 ~ 709549 (+)
G79309 NA other downstream 57158 2466765 ~ 2467171 (+)
G80062 NA other downstream 1174401 3584008 ~ 3584784 (+)
CI01000013_04051081_04064651 NA other downstream 1655326 4050837 ~ 4065829 (+)
G80845 NA other downstream 2425471 4835078 ~ 4836232 (+)
CI01000013_06050285_06059640 NA other downstream 3646691 6049864 ~ 6060269 (+)

Expression


Co-expression Network