CI01000013_02709871_02711692


Basic Information

Item Value
gene id CI01000013_02709871_02711692
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 2709453 ~ 2712499 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_02709871_02711692.mRNA
CTATTTAAAACAAAATAAATAGCATCATATGACCCCTTTAATTAAGTATGAATTCATAATTTTTTCTCTGTATGTTTTACTTTAATTGCATCATGCTTGTTTGAGAAGAAAATACATTATATATAGCGGGTAAAAGGGAAGCTTTAATTTTTTTTTGCCTTTGTGTATTTGTTTCTTGTTTGTTTTGTTTGTTTATTTATTGTTATTTATTTATAAAGCACAATTAAAACAATAATGTTGACCAATGTGCTGTACAATCAAACAAAAAAAATTACACAAAAAAATATTTGCAAGCACCTTCATTGAGATAAGAGCAAAGCTGTAGTTTTGGTTTACAGAAAGGGAGGAGTCAACATAGCCCCTGTTCTTCAAGCAGTCATAACTCAGATTCAGCATTAACAGACAAGAAAATCTGATGATGGAGCTTAGATTACGCTTCAATTCCACATTTAACAGCACTGCTGTGGGTTCAAAGCAGATCGCTCCTGCTGTAGTTCTGGGTTTGTGCTGTTTGGTGGGTTTGCCAAGCAATATCGCAGTAATCATCAGCATTGCTCGTGAGTGGAACAAACATTTGAACTTTACCTTAAAACTAATGGTAAACCTTGCTGTCTCTGATGCTTTGACCCTTTGCTTGGCTCCTGTGGTGCTGTGTGGAATACTGTTTGGATGGAAACTCGGCCTTTGGTCTTGTAGGATCTTATTCTTCTTGGGTCACTGGAGTCTGTATGTTGGTGTCCTGACGGTCACCTCCATGAGTGTGCACCGCTATCACAATGTCATCAAGTCCAGAGTCACTAACAGGATGATACTGCACAGACTGGAGAGACGGCACAGGCGCCTTCAGCTGATTGCCATCTGGATTCTAGCCTTTGTTTTTTCCCTACCGATATTTTTCACTCAAGGACTCATAGACAAGGATGGATTGCAGAGATATTTTAAATATAACTCTGAATCTTGTCATCTCCAGAAATTTTTTGATGATTCAGCAATTGTTGGTTGTCCTGACCATGATGAAAGTGAATATAGGGAGCTATTAAAGAATTTCGTGGACTGGTGTGAGAAAAACTGCCTCAGGCTAAATGCTAGCAAGACAGGAAATTGTGGTTGATTTTATCAGATCTCCTCATCAAGTGGTACCAGTAAACATACGTGAGTCAGAAACTGCAATTGTAACAACTTACAAGTAGGTGTATATTTGAACAACAAGCTCGATTAGTCTGACAATATGATGCAAGTCTATAAGAAGTGTCAAAGTCATATTCATTTGTTAAGATGACTGAGATCCTTCGGGGTATGTCATCCACCTCTTAAAGGGATAGTTCACCCAAAAATTAAAATTATCCCATGATTTACTCACCCTCAAGCCATCCTAGGTGTATATGACTATCTTTTTTCAGATAAACACAATCCGAGATATATTTAAAAATACCCCTAGTCCTCCAAGGTTTATAATGGTTGTGAATGGTAGCCCAAATTCTGAATACAGAAAAAATGCACACATCCATTAAAAAAAAAAAAAAAGAAGAAGAATCCATACGACTCCAGAGAGTTAATAAAGGCCTTCTGAAGCAAAGAGATGCATTTTTGTAAGAAAAATATCTGTATTTAAAACTTTATAAATTCAAATAACTAGCTTCCGGCGGACGACCGCACGCAGAATCACAGAATCAAGTAACTAATTACCAGGGAAAGTAACTATTGCGTTACTTTTAAAAAAAAAAAACCCAAATGTGTCAAATAACTTGGATGCCTCAATATTAAATATGTTAAATGAATGAAATGGACACTACATAGAAAAAAAAATATTATAAATCATTGTACACTAATCTACACTATTTTAAAGTTGCTGTGGGACAATGTGAGAGACACCTATCAAATTCAATATATTATTGCAAATATTATCATTAGTGGAAAA

Function

NR:

description
orf2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_02709871_02711692.mRNA True 1918 mRNA 0.36 2 2709453 2712499

Neighbor

gene id symbol gene type direction distance location
CI01000013_02692887_02696848 NA coding upstream 12433 2692443 ~ 2697020 (+)
CI01000013_02685665_02686639 NA coding upstream 22618 2682467 ~ 2686835 (+)
CI01000013_02666598_02669821 NUDT21, CPSF5, NUDT21.L coding upstream 39632 2666598 ~ 2669821 (+)
CI01000013_02656037_02664145 HSF4 coding upstream 45055 2656037 ~ 2664398 (+)
CI01000013_02528016_02529126 NA coding upstream 180207 2527448 ~ 2529246 (+)
CI01000013_02815238_02816664 NA coding downstream 102681 2815180 ~ 2817323 (+)
CI01000013_02859975_02863496 TMEM170A coding downstream 147476 2859975 ~ 2863946 (+)
CI01000013_03019688_03044233 TSNAXIP1, PARD6A coding downstream 307189 3019688 ~ 3044374 (+)
CI01000013_03087239_03094115 TSNAXIP1 coding downstream 374740 3087239 ~ 3094458 (+)
CI01000013_03121085_03147061 EDC4 coding downstream 408586 3121085 ~ 3147622 (+)
G79402 NA non-coding upstream 14328 2694712 ~ 2695125 (+)
G79358 NA non-coding upstream 111082 2595938 ~ 2598371 (+)
G79344 NA non-coding upstream 135930 2572701 ~ 2573523 (+)
G79332 NA non-coding upstream 182523 2526106 ~ 2526930 (+)
CI01000013_02510121_02510417 NA non-coding upstream 195598 2510083 ~ 2513164 (+)
G79397 NA non-coding downstream 21605 2734104 ~ 2748629 (+)
G79440 NA non-coding downstream 54954 2767453 ~ 2767739 (+)
G79441 NA non-coding downstream 55978 2768477 ~ 2769076 (+)
G79442 NA non-coding downstream 56978 2769477 ~ 2769829 (+)
G79443 NA non-coding downstream 57523 2770022 ~ 2770347 (+)
G79309 NA other upstream 242282 2466765 ~ 2467171 (+)
G77695 NA other upstream 1756484 946521 ~ 952969 (+)
G77533 NA other upstream 1999904 708833 ~ 709549 (+)
G80062 NA other downstream 871509 3584008 ~ 3584784 (+)
CI01000013_04051081_04064651 NA other downstream 1352434 4050837 ~ 4065829 (+)
G80845 NA other downstream 2122579 4835078 ~ 4836232 (+)
CI01000013_06050285_06059640 NA other downstream 3343799 6049864 ~ 6060269 (+)
CI01000013_06076169_06080164 NA other downstream 3366063 6075400 ~ 6081684 (+)

Expression


Co-expression Network