CI01000013_02815238_02816664


Basic Information

Item Value
gene id CI01000013_02815238_02816664
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 2815180 ~ 2817323 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_02815238_02816664.mRNA
GTATTAAAGGAAGTATGTATGCATCTATACATGCTTGCAGAATTTAATATGCATAGAGATGTGTCTGGACACATGTTGGGAAAGGGTAAACGGAATCACACCGGTTGCGTGGAAAACGAGCCACAAGACAAGCAAACCATACTCTCGTCTTCTTGGTAGAACAGCTGCTGTGATCAAGCTCGATCACCCCGGGCAAAAACAGCAATCTGGCTTCTGTTTGTTGAAAATGGCATGGGACATCAGTACTCATGCGATGCTGAATCTGAACAAACGCAATTCTTTCTAACTGCCATTGAGCGTTAACTTAAACAAAGAGTTAAACTGAGTAAGAGACTGTTTCGTCACTTTGATGCAAAGACCAGGAGTGATTTTATTATTTATTCATAACATCAAGATGCCAGTTCTCCTAAAAACAGCAGTGGGAAAATAGGTAAGCTGCCAAGACATGCAAATTAACCTCATTCCTCCCACAGGGATCGGCAATGATGTTTTGCAGGGCTGCGCATCCTCCATAGCTCTTTATTTGTAATCCACTGACTTCTTCCACTTAACTTCAGCCGTGAGGGCAAACATTAAATCTTGTTGCAATATGTCGAAATGAGATGCCAAAAGCAGCAGGGAGGCGGAACACAGTTCTCACAGGTTGAGACTCGATGGAGAGCTTTTGGAAGAAACAGGTCCAGGGTGCAAAAACAGATCTTGCCTCAGAGTCAACCATGTTTAATTGTGAATATGCACAGTATTATTATTAATATCTATTCATCAATTCTTGTACCACAGGTTAACGCAAGTAACACAAAGCATATTTCACAAATTAATCCCATTTGTGACAGGAACAGTTGAATATGGAACAGTCAAATCCATTAAATCCATTGCTCCAGGAGGCCATTTTACACTATCATAGCAAACTTGGACAAATCTTAAAAAAAAAAAAGTCAAATTTGA
>TU90526
AGTAAATGATGACAAAATGTTCATTTTTGGGTGAACTATCCCTTTAAGCCATTACACTCGTTTGTTTTTCACTTCTCTGTGACATCTGTTGGTCTCAGGTAAACGGAATCACACCGGTTGCGTGGAAAACGAGCCACAAGACAAGCAAACCATACTCTCGTCTTCTTGGTAGAACAGCTGCTGTGATCAAGCTCGATCACCCCGGGCAAAAACAGCAATCTGGCTTCTGTTTGTTGAAAATGGCATGGGACATCAGTACTCATGCGATGCTGAATCTGAACAAACGCAATTCTTTCTAACTGCCATTGAGCGTTAACTTAAACAAAGAGTTAAACTGAGTAAGAGACTGTTT
>TU90527
CGGCAATGATGTTTTGCAGGGCTGCGCATCCTCCATAGCTCTTTATTTGTAATCCACTGACTTCTTCCACTTAACTTCAGCCGTGAGGGCAAACATTAAATCTTGTTGCAATATGTCGAAATGAGATGCCAAAAGCAGCAGGGAGGCGGAACACAGTTCTCACAGGTTGAGACTCGATGGAGAGCTTTTGGAAGAAACAGGTCCAGGGTGCAAAAACAGATCTTGCCTCAGAGTCAACCATGTTTAATTGTGAATATGCACAGTATTATTATTAATATCTATTCATCAATTCTTGTACCACAGGTTAACGCAAGTAACACAAAGCATATTTCACAAATTAATCCCATTTGTGACAGGAACAGTTGAATATGGAACAGTCAAATCCATTAAATCCATTGCTCCAGGAGGCCATTTTACACTATCATAGCAAACTTGGACAAATCTTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_02815238_02816664.mRNA False 945 mRNA 0.40 2 2815180 2817323
TU90526 False 352 lncRNA 0.42 1 2816366 2816717
TU90527 True 447 lncRNA 0.40 1 2816856 2817302

Neighbor

gene id symbol gene type direction distance location
CI01000013_02709871_02711692 NA coding upstream 102681 2709453 ~ 2712499 (+)
CI01000013_02692887_02696848 NA coding upstream 118160 2692443 ~ 2697020 (+)
CI01000013_02685665_02686639 NA coding upstream 128345 2682467 ~ 2686835 (+)
CI01000013_02666598_02669821 NUDT21, CPSF5, NUDT21.L coding upstream 145359 2666598 ~ 2669821 (+)
CI01000013_02656037_02664145 HSF4 coding upstream 150782 2656037 ~ 2664398 (+)
CI01000013_02859975_02863496 TMEM170A coding downstream 42652 2859975 ~ 2863946 (+)
CI01000013_03019688_03044233 TSNAXIP1, PARD6A coding downstream 202365 3019688 ~ 3044374 (+)
CI01000013_03087239_03094115 TSNAXIP1 coding downstream 269916 3087239 ~ 3094458 (+)
CI01000013_03121085_03147061 EDC4 coding downstream 303762 3121085 ~ 3147622 (+)
CI01000013_03186643_03190449 NRN1LA coding downstream 369320 3186643 ~ 3190677 (+)
G79479 NA non-coding upstream 1672 2813171 ~ 2813508 (+)
G79478 NA non-coding upstream 2291 2812687 ~ 2812889 (+)
G79468 NA non-coding upstream 15718 2797984 ~ 2799462 (+)
G79467 NA non-coding upstream 18604 2796329 ~ 2796576 (+)
G79466 NA non-coding upstream 19377 2795091 ~ 2795803 (+)
G79484 NA non-coding downstream 102 2817425 ~ 2817690 (+)
G79485 NA non-coding downstream 758 2818081 ~ 2818490 (+)
G79523 NA non-coding downstream 7769 2825092 ~ 2825318 (+)
G79517 NA non-coding downstream 56691 2874014 ~ 2875003 (+)
G79540 NA non-coding downstream 59640 2876963 ~ 2877788 (+)
G79309 NA other upstream 348009 2466765 ~ 2467171 (+)
G77695 NA other upstream 1862211 946521 ~ 952969 (+)
G77533 NA other upstream 2105631 708833 ~ 709549 (+)
G80062 NA other downstream 766685 3584008 ~ 3584784 (+)
CI01000013_04051081_04064651 NA other downstream 1247610 4050837 ~ 4065829 (+)
G80845 NA other downstream 2017755 4835078 ~ 4836232 (+)
CI01000013_06050285_06059640 NA other downstream 3238975 6049864 ~ 6060269 (+)
CI01000013_06076169_06080164 NA other downstream 3261239 6075400 ~ 6081684 (+)
G79481 NA non-coding upstream 257 2815804 ~ 2816109 (+)

Expression


Co-expression Network