CI01000013_03019688_03044233 (TSNAXIP1, PARD6A)


Basic Information

Item Value
gene id CI01000013_03019688_03044233
gene name TSNAXIP1, PARD6A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 3019688 ~ 3044374 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_03019688_03044233.mRNA
TTTGAGGCGGAGTACCGAAGGTTTGCCCTGAAGAAGAAGGGAGCTGGGGGCTTCCAGGAATTCTACCAACTGCTTCAGACAATTCACCGAATCCCCGGAGTGGACGTGCTGCTGGGATATGCCGACATCCACGGAGATCTTCTTCCAATTAACAATGATGACAACTTCCACAAAGCACTGTCCTCCGCCAATCCGCTGCTTCGAATTATCATTCAAAGGAGAGTGGGGATTGCCGTTGCCGTGGTGACCATATGGCTAAGGGTTAGTCTCCAGATGGTGGTAACAGAGGATGAGGTCCAATATCACATCAACACCTCAAACACACAGCAGCCATTCTCTGCTGACGCAGATGTTTCTGTGTGGGGAAAGGCACAACCCTTCCCCAGTGCACTGTGTCTGAGGAAGTCTCTAAAGTCTCTCTGTATCTTTGTAATCCAGAGAGCAATGTTCACAAAGCTCTGCTCAGTCTGTGCCTGGAGGCCTCAGACACCTGGCAGGAGTTTTGATGTTTTATTGTATTTTTCAGGATCCCTCTATGCCTCCCACTCACCCTCCCTGGGTACCTCATCTGCCTCTCTCGCTCTCCAGCCCGTGAGCAGGTTTAATAACAGAGGCTGTCCTGATCTCTGTGGGGGTCCAGACACCAGACTAATGTATGTCTTGTCTTCTCCATATGAGCACAGGGGTCAGAGTTCACCACCCATCACCCTATCCACACGCAGGCCCCTGGGGCCTGATGATGTAGATGACTCCGTGCCGTTCCCCACAGGCTCTCTTCAGAGAAGAAAAAAGGGCCTAGGTGGTCTGCGTCAAGCGCAGCAGAAGTCCAAACCGACGCTGCTCATCAGCAATCCACAGGATTTCCGCCAAATCTCTTCTATCATAGATGTGGACATCTTACCCGAGACACACCTCCGTGTTCGTCTGCACAAGCACGGCACCCACAAACCCCTCGGTTTTTACATCCGTGATGGCGTCAGTGTCCGCGTCACTCCCCAAGGGGTGGAGAAAGTTCCCGGCGTCTTCATCTCCCGCCTAGTGAAAGGTGGTTTAGCAGAGAGCACAGGTTTGCTAGGAGTCAATGACGAGATTCTCGAAGTGAATGGAATCGATGTGGCCGGGAAATCACTGGACCAAGTCACCGACATGATGGTGGCTAACAGCCACAACCTCATCGTGACGGTGAAACCCGCCATTCAGCGCAACAACACGATGCACCGCGTGAGTAAATCTGCCGGCAATAGTTCCGCTGGCTCGGGAGGCTCCGCCCTCTCACATGACTCCGCCCCTAGCCCCGCCTCACAAAATGCCAGCCAATACAGCAACAGTAACAGTGTGGCTGAGGGCGACAGTGACGATGATACTGACCTCATCATCGAGAACGATAACCTGTACATGCCACACCGTATGACTAATGGCAATGGCAGCCATGGTAACGCCCTGTCGTCGGGTGCATTTGCACACAGACCCCTCCCACAAAGTGTTTCCTTGCCCAGTAGCAGCTCTTTAAGCTCTCTGACCACACCCACACATAACGGCAGCCCCACCAAGACAAGCAGTAGCCAAGAAAGCATGAGAGAGGACGGCAACTTCATTACGTTAAAAAAGGAAATTCCTTTCATGTTTGGAAAGGCCAGAATTCTGCACATTGGGACCTTTTTCACACAGTCCACTCCTGATGGCCAAAGCTGTGAGGCTTTTTTAGCCATGACCCGAGCGCTGTTTTCAGGCAATGAGTTCCCAGGTGAACGCTTGTTTAGACTTTGGAGATACCTGCCTCGGGACGTCCAGCGCTTCAAAGGCTGTCTATCAAACCAAGCGGCACTGATGGAGGAAGGATGGTGAAATGCATAAAACATCCCAGCGCTCGAAGGAACTTGAGCTAATCCTCCTTTATCATTATTATATTTGGGGATGAATGAAAATGTTACTAATATGTTTTATTTTTTTTAACCATTCCGAATGTTTTGAAGGACATCTTGAGGA

Function

symbol description
pard6a Predicted to enable protein kinase C binding activity. Acts upstream of or within neural tube formation. Located in apical plasma membrane. Orthologous to human PARD6A (par-6 family cell polarity regulator alpha).
tsnaxip1 Predicted to act upstream of or within establishment or maintenance of cell polarity. Predicted to be located in bicellular tight junction and membrane. Predicted to be active in cytoplasm. Orthologous to human TSNAXIP1 (translin associated factor X interacting protein 1).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG:

id description
K06093 PARD6; partitioning defective protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_03019688_03044233.mRNA True 1986 mRNA 0.51 9 3019688 3044374

Neighbor

gene id symbol gene type direction distance location
CI01000013_02859975_02863496 TMEM170A coding upstream 155742 2859975 ~ 2863946 (+)
CI01000013_02815238_02816664 NA coding upstream 202365 2815180 ~ 2817323 (+)
CI01000013_02709871_02711692 NA coding upstream 307189 2709453 ~ 2712499 (+)
CI01000013_02692887_02696848 NA coding upstream 322668 2692443 ~ 2697020 (+)
CI01000013_02685665_02686639 NA coding upstream 332853 2682467 ~ 2686835 (+)
CI01000013_03087239_03094115 TSNAXIP1 coding downstream 42865 3087239 ~ 3094458 (+)
CI01000013_03121085_03147061 EDC4 coding downstream 76711 3121085 ~ 3147622 (+)
CI01000013_03186643_03190449 NRN1LA coding downstream 142269 3186643 ~ 3190677 (+)
CI01000013_03225714_03236717 FAN1 coding downstream 181340 3225714 ~ 3237045 (+)
CI01000013_03241607_03258684 MBTPS1 coding downstream 197233 3241607 ~ 3259203 (+)
G79600 NA non-coding upstream 5935 3013211 ~ 3013753 (+)
G79598 NA non-coding upstream 7620 3011662 ~ 3012068 (+)
G79596 NA non-coding upstream 13418 3005981 ~ 3006270 (+)
G79508 NA non-coding upstream 19939 2975598 ~ 2999749 (+)
G79593 NA non-coding upstream 22293 2996552 ~ 2997395 (+)
G79601 NA non-coding downstream 2862 3047236 ~ 3047532 (+)
G79625 NA non-coding downstream 68239 3112613 ~ 3113067 (+)
G79503 NA non-coding downstream 147980 3192354 ~ 3194808 (+)
G79639 NA non-coding downstream 157537 3201911 ~ 3202313 (+)
G79909 NA non-coding downstream 321168 3365542 ~ 3365893 (+)
G79309 NA other upstream 552517 2466765 ~ 2467171 (+)
G77695 NA other upstream 2066719 946521 ~ 952969 (+)
G77533 NA other upstream 2310139 708833 ~ 709549 (+)
G80062 NA other downstream 539634 3584008 ~ 3584784 (+)
CI01000013_04051081_04064651 NA other downstream 1020559 4050837 ~ 4065829 (+)
G80845 NA other downstream 1790704 4835078 ~ 4836232 (+)
CI01000013_06050285_06059640 NA other downstream 3011924 6049864 ~ 6060269 (+)
CI01000013_06076169_06080164 NA other downstream 3034188 6075400 ~ 6081684 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013416 pard6a coding NC_007129.7 CM002902.2 22028674 ~ 22094102 (-)