Gene
RNA
| Item | Value |
|---|---|
| gene id | CI01000013_03477151_03488842 |
| gene name | CALB2, CALB2A |
| gene type | coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000013 |
| NCBI id | null |
| chromosome length | 12551977 |
| location | 3477040 ~ 3489333 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| symbol | description |
|---|---|
| calb2a | Predicted to enable calcium ion binding activity. Predicted to be involved in regulation of long-term synaptic potentiation and regulation of presynaptic cytosolic calcium ion concentration. Predicted to be active in several cellular components, including cytosol; dendrite; and terminal bouton. Is expressed in nervous system; neural tube; and pharyngeal arch 3-7 skeleton. Orthologous to human CALB2 (calbindin 2). |
| calb2 | Predicted to enable calcium ion binding activity. Predicted to be involved in regulation of long-term synaptic potentiation and regulation of presynaptic cytosolic calcium ion concentration. Located in cytosol. |
| id | name | namespace |
|---|---|---|
| GO:0005737 | cytoplasm | cellular_component |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| CI01000013_03477151_03488842.mRNA | True | 1418 | mRNA | 0.46 | 11 | 3477040 | 3489333 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000013_03457529_03463949 | PNP6 | coding | upstream | 12029 | 3457529 ~ 3465011 (+) |
| CI01000013_03262979_03269729 | SLC38A8A | coding | upstream | 207158 | 3262979 ~ 3269882 (+) |
| CI01000013_03241607_03258684 | MBTPS1 | coding | upstream | 217837 | 3241607 ~ 3259203 (+) |
| CI01000013_03225714_03236717 | FAN1 | coding | upstream | 239995 | 3225714 ~ 3237045 (+) |
| CI01000013_03186643_03190449 | NRN1LA | coding | upstream | 286363 | 3186643 ~ 3190677 (+) |
| CI01000013_03493064_03499971 | GOT2, GOT2A, GOT2B | coding | downstream | 3731 | 3493064 ~ 3500131 (+) |
| CI01000013_03501267_03503856 | NA | coding | downstream | 11934 | 3501267 ~ 3504388 (+) |
| CI01000013_03505522_03510594 | NA | coding | downstream | 16189 | 3505522 ~ 3510717 (+) |
| CI01000013_03565240_03566364 | NA | coding | downstream | 75803 | 3565136 ~ 3566551 (+) |
| CI01000013_03570185_03581155 | NA | coding | downstream | 80756 | 3570089 ~ 3581729 (+) |
| G80003 | NA | non-coding | upstream | 65035 | 3411495 ~ 3412005 (+) |
| G79994 | NA | non-coding | upstream | 86714 | 3389945 ~ 3390326 (+) |
| G79976 | NA | non-coding | upstream | 102797 | 3373928 ~ 3374243 (+) |
| G79909 | NA | non-coding | upstream | 111147 | 3365542 ~ 3365893 (+) |
| G79639 | NA | non-coding | upstream | 274727 | 3201911 ~ 3202313 (+) |
| G80058 | NA | non-coding | downstream | 41102 | 3530435 ~ 3530847 (+) |
| G80041 | NA | non-coding | downstream | 113030 | 3602363 ~ 3652575 (+) |
| G80040 | NA | non-coding | downstream | 217390 | 3706723 ~ 3708228 (+) |
| G80037 | NA | non-coding | downstream | 219624 | 3708957 ~ 3712091 (+) |
| G80068 | NA | non-coding | downstream | 223643 | 3712976 ~ 3713187 (+) |
| G79309 | NA | other | upstream | 1009869 | 2466765 ~ 2467171 (+) |
| G77695 | NA | other | upstream | 2524071 | 946521 ~ 952969 (+) |
| G77533 | NA | other | upstream | 2767491 | 708833 ~ 709549 (+) |
| G80062 | NA | other | downstream | 94675 | 3584008 ~ 3584784 (+) |
| CI01000013_04051081_04064651 | NA | other | downstream | 575600 | 4050837 ~ 4065829 (+) |
| G80845 | NA | other | downstream | 1345745 | 4835078 ~ 4836232 (+) |
| CI01000013_06050285_06059640 | NA | other | downstream | 2566965 | 6049864 ~ 6060269 (+) |
| CI01000013_06076169_06080164 | NA | other | downstream | 2589229 | 6075400 ~ 6081684 (+) |
