Gene
RNA
| Item | Value |
|---|---|
| gene id | CI01000013_03715150_03721616 |
| gene name | SYNM |
| gene type | coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000013 |
| NCBI id | null |
| chromosome length | 12551977 |
| location | 3715150 ~ 3721731 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| symbol | description |
|---|---|
| synm | Predicted to be located in intermediate filament. Orthologous to human SYNM (synemin). |
| id | name | namespace |
|---|---|---|
| GO:0005882 | intermediate filament | cellular_component |
| id | description |
|---|---|
| K10376 | DMN; desmuslin |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| CI01000013_03715150_03721616.mRNA | True | 3328 | mRNA | 0.45 | 5 | 3715150 | 3721731 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000013_03617490_03705093 | IGF1R, IGF1RA | coding | upstream | 10057 | 3617490 ~ 3705093 (+) |
| CI01000013_03570185_03581155 | NA | coding | upstream | 133421 | 3570089 ~ 3581729 (+) |
| CI01000013_03565240_03566364 | NA | coding | upstream | 148599 | 3565136 ~ 3566551 (+) |
| CI01000013_03505522_03510594 | NA | coding | upstream | 204433 | 3505522 ~ 3510717 (+) |
| CI01000013_03501267_03503856 | NA | coding | upstream | 210762 | 3501267 ~ 3504388 (+) |
| CI01000013_03744519_03787129 | CTTNBP2 | coding | downstream | 22788 | 3744519 ~ 3788177 (+) |
| CI01000013_03823326_03839656 | ASZ1 | coding | downstream | 101595 | 3823326 ~ 3839910 (+) |
| CI01000013_03843207_03852634 | WNT2 | coding | downstream | 121476 | 3843207 ~ 3854025 (+) |
| CI01000013_03856173_03872356 | BCL2L13 | coding | downstream | 134442 | 3856173 ~ 3872947 (+) |
| CI01000013_03885988_03895027 | KIAA1147 | coding | downstream | 164257 | 3885988 ~ 3895027 (+) |
| G80069 | NA | non-coding | upstream | 1633 | 3713297 ~ 3713517 (+) |
| G80068 | NA | non-coding | upstream | 1963 | 3712976 ~ 3713187 (+) |
| G80037 | NA | non-coding | upstream | 3059 | 3708957 ~ 3712091 (+) |
| G80040 | NA | non-coding | upstream | 6922 | 3706723 ~ 3708228 (+) |
| G80041 | NA | non-coding | upstream | 62575 | 3602363 ~ 3652575 (+) |
| G80072 | NA | non-coding | downstream | 10412 | 3732143 ~ 3740009 (+) |
| G80075 | NA | non-coding | downstream | 18545 | 3740276 ~ 3740559 (+) |
| G80081 | NA | non-coding | downstream | 70936 | 3792667 ~ 3792881 (+) |
| G80083 | NA | non-coding | downstream | 71273 | 3793004 ~ 3793400 (+) |
| G80087 | NA | non-coding | downstream | 83484 | 3805215 ~ 3805470 (+) |
| G80062 | NA | other | upstream | 130366 | 3584008 ~ 3584784 (+) |
| G79309 | NA | other | upstream | 1247979 | 2466765 ~ 2467171 (+) |
| G77695 | NA | other | upstream | 2762181 | 946521 ~ 952969 (+) |
| G77533 | NA | other | upstream | 3005601 | 708833 ~ 709549 (+) |
| CI01000013_04051081_04064651 | NA | other | downstream | 343202 | 4050837 ~ 4065829 (+) |
| G80845 | NA | other | downstream | 1113347 | 4835078 ~ 4836232 (+) |
| CI01000013_06050285_06059640 | NA | other | downstream | 2334567 | 6049864 ~ 6060269 (+) |
| CI01000013_06076169_06080164 | NA | other | downstream | 2356831 | 6075400 ~ 6081684 (+) |
| G81994 | NA | other | downstream | 3614214 | 7335945 ~ 7338239 (+) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|---|---|---|---|---|---|
| zebrafish (Danio rerio) | XLOC_013399 | synm | coding | NC_007129.7 | CM002902.2 | 20859661 ~ 20869175 (-) |
