Gene
RNA
| Item | Value |
|---|---|
| gene id | CI01000013_03902606_03908849 |
| gene name | IGHMBP2 |
| gene type | coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000013 |
| NCBI id | null |
| chromosome length | 12551977 |
| location | 3902606 ~ 3909058 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| symbol | description |
|---|---|
| ighmbp2 | Predicted to enable 5'-3' DNA helicase activity. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease axonal type 2S and distal spinal muscular atrophy 1. Orthologous to human IGHMBP2 (immunoglobulin mu DNA binding protein 2). |
| id | description |
|---|---|
| K19036 | IGHMBP2; ATP-dependent RNA/DNA helicase IGHMBP2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| CI01000013_03902606_03908849.mRNA | True | 3263 | mRNA | 0.45 | 15 | 3902606 | 3909058 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000013_03885988_03895027 | KIAA1147 | coding | upstream | 7579 | 3885988 ~ 3895027 (+) |
| CI01000013_03856173_03872356 | BCL2L13 | coding | upstream | 29659 | 3856173 ~ 3872947 (+) |
| CI01000013_03843207_03852634 | WNT2 | coding | upstream | 48581 | 3843207 ~ 3854025 (+) |
| CI01000013_03823326_03839656 | ASZ1 | coding | upstream | 62696 | 3823326 ~ 3839910 (+) |
| CI01000013_03744519_03787129 | CTTNBP2 | coding | upstream | 114429 | 3744519 ~ 3788177 (+) |
| CI01000013_03937929_03938255 | FAM180B | coding | downstream | 28871 | 3937929 ~ 3938261 (+) |
| CI01000013_03949848_03950925 | NA | coding | downstream | 40790 | 3949848 ~ 3951293 (+) |
| CI01000013_03952621_03964132 | KIF23 | coding | downstream | 43563 | 3952621 ~ 3964234 (+) |
| CI01000013_04051081_04064651 | NA | coding | downstream | 141779 | 4050837 ~ 4065829 (+) |
| CI01000013_04084679_04088148 | NA | coding | downstream | 174756 | 4083814 ~ 4090171 (+) |
| G80088 | NA | non-coding | upstream | 95891 | 3806054 ~ 3806715 (+) |
| G80087 | NA | non-coding | upstream | 97136 | 3805215 ~ 3805470 (+) |
| G80083 | NA | non-coding | upstream | 109206 | 3793004 ~ 3793400 (+) |
| G80081 | NA | non-coding | upstream | 109725 | 3792667 ~ 3792881 (+) |
| G80075 | NA | non-coding | upstream | 162047 | 3740276 ~ 3740559 (+) |
| G80143 | NA | non-coding | downstream | 18112 | 3927170 ~ 3927724 (+) |
| G80144 | NA | non-coding | downstream | 19264 | 3928322 ~ 3928550 (+) |
| G80105 | NA | non-coding | downstream | 37746 | 3946804 ~ 3948697 (+) |
| G80153 | NA | non-coding | downstream | 101257 | 4010315 ~ 4010552 (+) |
| G80062 | NA | other | upstream | 317822 | 3584008 ~ 3584784 (+) |
| G79309 | NA | other | upstream | 1435435 | 2466765 ~ 2467171 (+) |
| G77695 | NA | other | upstream | 2949637 | 946521 ~ 952969 (+) |
| G77533 | NA | other | upstream | 3193057 | 708833 ~ 709549 (+) |
| G80845 | NA | other | downstream | 926020 | 4835078 ~ 4836232 (+) |
| CI01000013_06050285_06059640 | NA | other | downstream | 2147240 | 6049864 ~ 6060269 (+) |
| CI01000013_06076169_06080164 | NA | other | downstream | 2169504 | 6075400 ~ 6081684 (+) |
| G81994 | NA | other | downstream | 3426887 | 7335945 ~ 7338239 (+) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|---|---|---|---|---|---|
| zebrafish (Danio rerio) | XLOC_013391 | ighmbp2 | coding | NC_007129.7 | CM002902.2 | 20516527 ~ 20532339 (-) |
