CI01000013_04344339_04347938 (AAGAB)


Basic Information

Item Value
gene id CI01000013_04344339_04347938
gene name AAGAB
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 4344339 ~ 4348083 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_04344339_04347938.mRNA
ATGGCAGATGATCAAGGAGATGAAGTACCTGCTCTGCCGTGTATCTTAGTCACAAGTTGTGATTCAAGCTTTAAAGAAGAGGAGCTCGTTAGACAGATCTTGGGCTCAGAATCAATACCACAAGCTTCCAAAATAGAGGAAAGAGTTTCTTGGTTTCCATGGACAATTAACAACAAATACTACACAGCAGATGTCAGTCTATGTGTGGTTTCAAGTACATTCGACATGAATGCAGAGGTTGCCCGCTCTATGCAAGCATTCATCGTTTATTTTGACAGCAAAACTAAAGACGGCCTTAACAATGTCAACCCCTGGTTATCAGTAGTAGAGGAACTGGCTCCAGAAGTGCTGATCCTAGTGTGTGACCATGTATGTGACAGCGATGACTTCCCAGAATCCACTGGAATAAAACGAATACTGCAGGCCCTCAACGCCAACGTGTGGTCCAGTGTCGAGATGAAAGATGATCCCATGATTGACATAGATATCCAAGAGTTGGCTAATCTAACAGCTGGGGATGCAGATGTGGAGAATTTTGAACGGCTCTTTACAAAATTGAAAGAAATGAAAGTTGATTTACCCTCAATCAGGTTGCTAAAGCATTTTGGATGGCTATTGGTGGAGACCAGGATGAGATTGATGGCTTGTCATCAGGGGAGGAGAGTTAAGGCCAGAGTTACTCTTAACCAGCTTAAACTGTTAATACTCAGCCCACCCTTCGAACCCCGTCGTCCCAAATCTGTCCAGCCCAGCCCTGTCCTGCCCAAGAAACCAAGATCCGACGTGAGGAACATGCAAGGAAGTGGGCAAAAACAGCAACTGAAATTTTCATGTTACTGCTGTTACTATAATCTAAACGTCCAACACCTCAATCAGGCAGTACAGAGTCATTATGGGCTTTTGGCTTTAAACATTGTAATCTCAGAGCCAGGGGATGGGTTGCGGGGGGGGGCAAGATTATCTTGTCTGCTCTCTGGTGCAAGCCACATGCAAGGATGAAGCCTATGGTTCTGTCAAGAGTTGTTGTAAATCATATGACAGATGAGCTGACAAATATAGATTGTTTTTAAACTTAGTTTTCCTTATTTTCTTGATAAGCCACAATTACGGACTATGCTTGAGCATGTCATTAGCTCTTCATCAA

Function

symbol description
aagab Predicted to enable GTP binding activity and GTPase activity. Human ortholog(s) of this gene implicated in punctate palmoplantar keratoderma type I. Orthologous to human AAGAB (alpha and gamma adaptin binding protein).

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_04344339_04347938.mRNA True 1144 mRNA 0.44 6 4344339 4348083

Neighbor

gene id symbol gene type direction distance location
CI01000013_04316134_04317091 NA coding upstream 27141 4316134 ~ 4317198 (+)
CI01000013_04084679_04088148 NA coding upstream 254717 4083814 ~ 4090171 (+)
CI01000013_04051081_04064651 NA coding upstream 279170 4050837 ~ 4065829 (+)
CI01000013_03952621_03964132 KIF23 coding upstream 380105 3952621 ~ 3964234 (+)
CI01000013_03949848_03950925 NA coding upstream 393046 3949848 ~ 3951293 (+)
CI01000013_04425884_04426805 NA coding downstream 77665 4425748 ~ 4427010 (+)
CI01000013_04505188_04527744 NA coding downstream 157062 4505145 ~ 4527872 (+)
CI01000013_04542059_04550082 LCTLB, LCTL coding downstream 193976 4542059 ~ 4550307 (+)
CI01000013_04612468_04618550 NA coding downstream 263971 4612054 ~ 4619000 (+)
CI01000013_04657029_04672057 MEGF11 coding downstream 308720 4656803 ~ 4672742 (+)
G80512 NA non-coding upstream 120305 4223453 ~ 4224034 (+)
G80529 NA non-coding upstream 125308 4218648 ~ 4219031 (+)
G80506 NA non-coding upstream 137628 4206137 ~ 4206711 (+)
G80518 NA non-coding upstream 160447 4183672 ~ 4183892 (+)
G80505 NA non-coding upstream 217210 4126914 ~ 4127129 (+)
G80614 NA non-coding downstream 64211 4412294 ~ 4412508 (+)
G80616 NA non-coding downstream 65014 4413097 ~ 4413304 (+)
G80607 NA non-coding downstream 68178 4416261 ~ 4444625 (+)
G80775 NA non-coding downstream 114672 4462755 ~ 4463021 (+)
G80812 NA non-coding downstream 169072 4517155 ~ 4517368 (+)
G80062 NA other upstream 759555 3584008 ~ 3584784 (+)
G79309 NA other upstream 1877168 2466765 ~ 2467171 (+)
G77695 NA other upstream 3391370 946521 ~ 952969 (+)
G77533 NA other upstream 3634790 708833 ~ 709549 (+)
G80845 NA other downstream 486995 4835078 ~ 4836232 (+)
CI01000013_06050285_06059640 NA other downstream 1708215 6049864 ~ 6060269 (+)
CI01000013_06076169_06080164 NA other downstream 1730479 6075400 ~ 6081684 (+)
G81994 NA other downstream 2987862 7335945 ~ 7338239 (+)
G82168 NA other downstream 3680255 8028338 ~ 8041343 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013385 aagab coding NC_007129.7 CM002902.2 19812608 ~ 19819812 (-)