CI01000013_04869003_04877964 (AARS)


Basic Information

Item Value
gene id CI01000013_04869003_04877964
gene name AARS
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 4868965 ~ 4878377 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_04869003_04877964.mRNA
GTATATATCCCTAGTCCACCAAGAAAAACACAACCAGCATGGACTCTTCGCTGACTGCTGCACAGATCCGTGAGAAGTTCATCGACTTCTTCCGCCGCCATGAGCATCAGTACGTCCACTCGTCAGCCACCATTCCGCTAGATGATCCCACTCTGCTCTTTGCCAATGCCGGGATGAACCAGTTCAAGCCCATCTTCCTGAACACCATCGACCCGTCCCACCCAATGGCCAGACTTCGGCGTGCTGCAAACACACAGAAGTGTATTCGTGCTGGTGGCAAACACAATGATCTTGATGATGTGGGCAAAGATGTGTACCATCACACTTTCTTTGAGATGTTGGGCTCTTGGTCCTTTGGAGATTATTTCAAACACCTGGCCTGCAAGATGGCACTGGAGCTGCTGACGCAGGAGTTTGGCATTCCTATTGAGCGCCTCTATGTGACTTATTTTGGTGGTCATGCTGATGCAGGCCTGGAGCCTGACCTGGAGTGCAAGCAGATCTGGCTAGACTTGGGAATGGAGGAGAGCCGTATTCTGCCCGGCAGTATGAAAGATAATTTCTGGGAGATGGGTGACACTGGTCCTTGTGGTCCATGCAGCGAGATCCACTTTGATCGCATTGGAGGCAGAGATGCCGCCCACTTGGTCAACATGGATGACCCAAATGTGCTTGAAATCTGGAATCTGGTGTTCATCCAGTTCAACAGGGAGTCGGAGACGGTGCTAAAGCCTCTGCCCAAGAAGAGCATTGACACAGGGATGGGACTGGAGCGCTTGGTCTCTGTGCTGCAAAACAAGATGTCCAACTATGACACTGATCTGTTCATCCCTTATTTTGAAGCCATTCAGAAGGGCACAGGTGCCAGGGCATACACAGGAAAGGTTGGTGCAGAAGACACAGATGGTATCGACATGGCATACCGTGTTCTGGCTGATCACGCCCGCACCATTACTATTGCCTTGTCTGATGGCGGCAGACCTGACAACACAGGCAGAGGCTATGTGCTGAGGAGAATTCTACGTCGTGCAGTGCGATACTCTCACGAGAAGCTGGGTGCACAGAGGGGCTTCTTCGCCTCCTTAGTAGATGTAGTGGTTGAGTCCCTGGGTGATGCTTTCCCAGAGTTGCGGAAAGATCCTGATATGGTAAAAGACATCATCAATGAGGAAGAGGCACAGTTCCTCAAAACCCTTAGCAGGGGACGCCGTATCCTGGACCGCAAGATCCAGAGCCTTGGAGACAGCACGACTATACCAGGTGACACAGCTTGGCTGCTGTACGACACATATGGTTTTCCTCTGGACCTCACAGCCCTGATCGCTGAGGAAAGGGGAATGGAGGTGGACAGGCAGGCCTTTGAGGAGGAGAAGAAAGCTGCTCAGTTGAAGTCTCAGGGCAAAGGCTCTGGGGACGAGGACCACATCATGCTGGACATCTACGCCATTGAAGAGCTCAGAAACAAAGGTGTCGCTGCCACTGACGACAGCCCCAAGTACAAGTACACTTCAGATGATAATGGCAACTATGAGTTTGAACAGGCAGTGGGCACAGTGTTGGCTCTCAGGAGGGAGCGTGCATTTGTTGATGAGGTGACCACAGGTCAAGAGTGCGGAGTGCTGCTCGACAAGACCTCTTTCTATGCCGAGCAGGGTGGGCAGAGCTTTGATGAAGGCTACATGCTCCGAGAAAACGACTCTGCTGAGGATAGGATGGAGTTCACTGTGAAGAATACTCAGGTGCGCGGAGGATACGTGCTGCATATTGGTACAGTATACGGCACACTGAAGGTTGGAGACCGCCTAACTCTGCATGTGGATGAGACTCGTCGTAGGCCCATCATGAGTAACCATACCGCCACACACATCCTAAACTTTGCTTTGCGCTCAGTTTTGGGAGAGGCAGATCAGCGGGGCTCTTTGGTCGCTCCAGACAGACTGCGCTTTGACTTCACAGCTAAAGGTGCAATGAGCACAGATGAAGTCCGACGCACAGAAGAGATCGCCTCCAACATGATTCGTGACGCCAAGGCGGTCTACGCTCTGGACGCTCCCCTTGCAGCGGCTAAAGCCATACAGGGTCTGCGGGCAGTGTTTGATGAGACGTACCCTGATCCTGTTAGAGTGGTGTCTATTGGCGTCCCAGTGGAGGAGCTGCTGGCTGATCCTAACAGCCCTGCAGGCTCACTCACCTCCATCGAGTTCTGCGGTGGAACGCACCTGCAGAACTCTGGTCATGCTGCTCCATTTGTGATTGTATCAGAGGAGGCCATTGCTAAAGGAATCAGGAGGATTGTGGCAGTGACTGGAGCAGAGGCTCAGAAGGCCCAGAGGAAAGCTGATGCCCTGAAGCTGGGTCTAGATGCCATGGCAGAGAAAGTGAAGGCCCAGACCGCCCCAAATAAAGACGTTCAGAAGGAGATTGCTGATATGACAGAGTCCCTGGGCACTGCAGTGATCTCTCAGTGGCAGAAGGATGAGATGAGGGATTCCCTGAAGGGTCTTAAAAAGATCATGGATGACCTGGACCGTGCCAGCAAGGCTGATGTACAGAAGAGGGTCCTGGAAAAGACGAAGGAGATCATCGATAGTAACCCTAATCAACCTCTAATTGTGATGGAGATGGAGAGTGGAGCATCTGCAAAGGCTTTGAATGAGTCTCTGAAGTTACTGAAGACAAATTCACCACAGACTGCTGCTATGCTTTTTACTGTGGACAACGATGCAGGAAAAATTATCTGCTTGTGCCAAGTGCCTCAGGATGTTGCAAACCGAGGCCTGAAGGCCAGTGAATGGGTTCAGGAAGTGTGCCCTCTGCTGGATGGAAAAGGAGGCGGTAAAGACATGTCTGCCCAGGCTACGGGTAGAAACACGCACTGCATACAGGAAGCTCTACAGCTGGCCAATGAGTTTGCCCGCCTCAAACTAGCTATGCCTGCTGAATTTTCAAACTGGACATTCCAGGCTGGAAAATGTAAAAACTGTATAGAAATGTGTCATTTGTCAATTATGGATAGGAAGGGAAATAATTAGCGCCCTCTCTCAGTTAACTGGGTCATTGCAGGGCAATACATTAGTAGATCAACTGTTCCATCAAACCGTCCTGATCTAAAGCACATGGGGCTATGCATGCTTTCTGATTGGAAAATTACATTTAGATTGACAGTTTAATGTTGCTAGCTAAAATCGTCCTCATTGCCATTGTTATCTTTCTGAACATACAAGGACGAAAATCATTGTCATTATCATTCTAACAGGTGTCTTTTTGTCATAAGATTTTCCATTACATTTGTAGAATTGTTGCTCTGTCTGTTTAACAGGAGAGATGTCATAATGGTTCAGGCAAATTCATGTCAACACTTAACCTTTCACTAGGTCTTCTAGCATCTGTTTTGAGGAAATGAGCCATCACTTGTCATATGAAATGCATCACTTGTTAATGGTAA

Function

symbol description
aars Enables Ser-tRNA(Ala) hydrolase activity; alanine-tRNA ligase activity; and translation regulator activity. Involved in alanyl-tRNA aminoacylation; regulation of cytoplasmic translational fidelity; and tRNA modification. Acts upstream of or within cerebellar Purkinje cell layer development; negative regulation of neuron apoptotic process; and neuromuscular process controlling balance. Predicted to be located in cytoplasm. Predicted to be active in mitochondrion. Is expressed in several structures, including adrenal gland; alimentary system; nervous system; respiratory system; and urinary system. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease axonal type 2N and developmental and epileptic encephalopathy 29. Orthologous to human AARS1 (alanyl-tRNA synthetase 1).

GO:

id name namespace
GO:0006450 regulation of translational fidelity biological_process

KEGG:

id description
K01872 AARS, alaS; alanyl-tRNA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_04869003_04877964.mRNA True 3445 mRNA 0.50 21 4868965 4878377

Neighbor

gene id symbol gene type direction distance location
CI01000013_04854576_04864881 NA coding upstream 3738 4854576 ~ 4865227 (+)
CI01000013_04837614_04840771 NA coding upstream 27394 4837614 ~ 4841571 (+)
CI01000013_04805165_04810980 NA coding upstream 57985 4804479 ~ 4810980 (+)
CI01000013_04788303_04790895 PPCDC coding upstream 77940 4788303 ~ 4791025 (+)
CI01000013_04774039_04780331 VWA9 coding upstream 88203 4774039 ~ 4780762 (+)
CI01000013_04916607_04940299 SF3B3, SF3B3.L coding downstream 37936 4916313 ~ 4940308 (+)
CI01000013_04943413_04948991 IL34 coding downstream 65036 4943413 ~ 4949256 (+)
CI01000013_04950930_04976334 LONP2 coding downstream 72553 4950930 ~ 4976710 (+)
CI01000013_04989803_04992613 NA coding downstream 111157 4989534 ~ 4992888 (+)
CI01000013_05246618_05251189 NA coding downstream 366417 5244794 ~ 5251310 (+)
G80893 NA non-coding upstream 19168 4849439 ~ 4849797 (+)
G80850 NA non-coding upstream 40801 4826318 ~ 4828164 (+)
G80842 NA non-coding upstream 50018 4816470 ~ 4818947 (+)
G80879 NA non-coding upstream 98427 4770310 ~ 4770538 (+)
G80875 NA non-coding upstream 150668 4718083 ~ 4718297 (+)
G80919 NA non-coding downstream 40606 4918983 ~ 4919289 (+)
G80798 NA non-coding downstream 98872 4977249 ~ 4977687 (+)
G80795 NA non-coding downstream 99603 4977980 ~ 4978800 (+)
G80933 NA non-coding downstream 125997 5004374 ~ 5004897 (+)
G80942 NA non-coding downstream 149749 5028126 ~ 5028475 (+)
G80845 NA other upstream 32733 4835078 ~ 4836232 (+)
CI01000013_04051081_04064651 NA other upstream 803136 4050837 ~ 4065829 (+)
G80062 NA other upstream 1284181 3584008 ~ 3584784 (+)
G79309 NA other upstream 2401794 2466765 ~ 2467171 (+)
G77695 NA other upstream 3915996 946521 ~ 952969 (+)
CI01000013_06050285_06059640 NA other downstream 1177921 6049864 ~ 6060269 (+)
CI01000013_06076169_06080164 NA other downstream 1200185 6075400 ~ 6081684 (+)
G81994 NA other downstream 2457568 7335945 ~ 7338239 (+)
G82168 NA other downstream 3149961 8028338 ~ 8041343 (+)
G82581 NA other downstream 4450952 9329329 ~ 9334948 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00020337 NA coding CM030127.1 CM030127.1 16605616 ~ 16614656 (-)