trnap-ugg_44


Basic Information

Item Value
gene id trnap-ugg_44
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019171833.1
NCBI id APWO02001431.1
chromosome length 36266
location 31209 ~ 31279 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>trnap-ugg_44
ggctcgttggtctaggggtatgattctcgctttgggtgcgagaggtcccggttcaaatcccggacgagccc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnap-ugg_44 True 71 tRNA 0.61 1 31209 31279

Neighbor

gene id symbol gene type direction distance location
G263827 NA non-coding upstream 13206 17766 ~ 18003 (+)
trnap-ugg_43 NA other upstream 83 31055 ~ 31126 (+)
trnap-cgg_30 NA other upstream 247 30891 ~ 30962 (+)
trnap-agg_66 NA other upstream 406 30732 ~ 30803 (+)
trnap-ugg_42 NA other upstream 690 30448 ~ 30519 (+)
trnap-ugg_41 NA other upstream 864 30274 ~ 30345 (+)
trnap-ugg_45 NA other downstream 81 31360 ~ 31431 (+)
trnap-ugg_46 NA other downstream 239 31518 ~ 31587 (+)
trnap-agg_67 NA other downstream 391 31670 ~ 31741 (+)
trnap-ugg_47 NA other downstream 565 31844 ~ 31914 (+)
trnap-agg_68 NA other downstream 718 31997 ~ 32066 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) trnap-ugg-46 NA coding NC_048579.1 CM023233.2 41281506 ~ 41281576 (+)
striped catfish (Pangasianodon hypophthalmus) trnap-ugg_12 NA coding NC_047606.1 CM018552.1 4914316 ~ 4914386 (-)
tiger barb (Puntius tetrazona) trnap-ugg_54 NA coding NC_056718.1 CM032087.1 2161223 ~ 2161293 (-)
mexican tetra (Astyanax mexicanus) trnap-ugg_12 NA coding NC_035919.1 CM008322.1 10219216 ~ 10219284 (+)