Fish Transcriptome and Expression Database

Home /
Search /
- Gene
- RNA
- Bioproject
Expression /
Analysis /
- Coding ability prediction
- Expression count
- Visual Omics
Tools /
- Neighbor
- BLAST
Statistics /
Download /
Help

ornamental fish

trnay-gua_14

Basic Information

Item	Value
gene id	trnay-gua_14
gene name	NA
gene type	coding
species	mexican tetra (Astyanax mexicanus)
category of species	ornamental fish

Chromosome Information

Item	Value
chromosome id	NW_019171900.1
NCBI id	APWO02001498.1
chromosome length	225111
location	186277 ~ 186363 (-)
genome version	Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>trnay-gua_14
CCTTCGATAGCTCAGTTGGTAGAGCGGAGGACTGTAGATCCTTaggtcgctggttcaaatccggCTCGAAGga

Function

GO: NA

KEGG: NA

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
trnay-gua_14	True	73	tRNA	0.53	2	186277	186363

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
trnay-gua_13	NA	coding	downstream	571	185620 ~ 185706 (-)
trnay-gua_12	NA	coding	downstream	1228	184963 ~ 185049 (-)
trnay-gua_15	NA	coding	upstream	571	186934 ~ 187020 (-)
trnay-gua_16	NA	coding	upstream	1228	187591 ~ 187677 (-)
trnay-gua_17	NA	coding	upstream	1885	188248 ~ 188334 (-)
trnay-gua_18	NA	coding	upstream	2542	188905 ~ 188991 (-)
trnay-gua_19	NA	coding	upstream	3199	189562 ~ 189648 (-)
G265405	NA	non-coding	downstream	27100	157012 ~ 159177 (-)

Expression

Co-expression Network