CI01000013_07012984_07019146 (MLC1)


Basic Information

Item Value
gene id CI01000013_07012984_07019146
gene name MLC1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 7012723 ~ 7019146 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_07012984_07019146.mRNA
GTTTAAATCTACATGTTTAATGCTTCAAACATGGAGGTTTGTGACTGGTTGACCTTCAAATGCACTTAGAGAAGCATTGCCTTTAAGTTGAATGCCACTTAAAGGCAATAGGGATGAGGTAAGTTTAAGTGTCATTAAAAGGATCACATGACAATCTGTCAATAGTACTTAAGACATATGCTTTACCTCCTTCTGTAAAAGTTTGCATTCTCTGCATTTTTTATCAATATGTGATCTATATGCATTGGGTCTCTAGGGGTCATGGATATCAGGATGCAACGAGACGAGGCATCTGCCCAGGAAGTGTTCAGCTACGCCCAGATGTCAACCCTAGAGCGAAACAGTGGGGTAGGGACGCTGAGTCGGCATCTGGAGCGGGAGAGGTTGGAAAGAGACAGCTACACGGTGGATGTCAGGGCCAGTGACCTGCAGCTGGATCAGCCTGGGCAATTACATCCCTGCTTTAGCTACAGAGTCTGGCTTTACAGCGTCGTTATAGGGGTAAGAGCTTTGACTCAGCAGACTTTCACTCCTGTGGCTAACAGACTTAACACACTGGTTTTCTCAAATTCATCTGTATCTGACCCCCAGAGCAGCTTGCTGATAGCGGCAGCTTTCTCTCTCTATATGGGTAATGTGTTTCCAGCTGCAATGGACTACCTGCGTTGTACTGCTGGATCTAGTATTCCAGCTGCAGTGGTGAGCTTTGCTATTGCCAAGAACAGACACGTTGCAGTCTCAGACTTTCAAATGGTCTACGTGTCCTCCTTTGCTGTGACAACCACGTGCCTGGTGTGGTTCGGATGTAAACTAGCCATTAGTCCCTCAGCCATCAATATTAACTTTAACCTGCTCCTGCTTATTGTGCTGGAAGTGCTCACGGCTAGTACTGTTATCCTATCAGCTCGCTCGGTGGAGGACTGCTGCAGTCACGGAAAGCCCGTGTCTGATGGCCCTGTGGTTGTGACCCCAGCTTCGTTCCCCACTCGTCTTCTCAAGGCTTACGCCGTAATTGAGGTTATAGTGGGCATCTCCGCTGTATTCGGAGGAATTATTGCTCTCAATTTGGGTGCTCTCCTCCCAGAGCCATACCTTTCTGTCACTTTCTTCTGGATTCTGTGTTTCCCCAGTGCCATTGCCAGCCATGTGGTGGCAGAATACCCCAGCAAGAGTCTGGTGGAGATGCTGATTGCTATAAGTAGTGTGACCTCACCACTGCTTTTCTCAGCGTCTGGATTCTTGTCCAGCAGTGTGATTAATTTTATTGAGATCTTTCTGCATGAAGTGGCATCAGTCAAGCAGACGTATGACATACTGCTGCTTGTCCTGATGGGACTGCTGCTGGTGCAGGCGGTGCTGACATTAACCACCGTAATAAAGTGCGCTTCCTACAAGGGCCAGCTCCGCATGGGAGGCACTGAATGGGACATGCTACACAAAAAGCACTGTGAG

Function

symbol description
mlc1 Acts upstream of or within protein localization to cell surface. Located in cell-cell junction. Is expressed in nervous system and radial glial cell. Human ortholog(s) of this gene implicated in megalencephalic leukoencephalopathy with subcortical cysts 1. Orthologous to human MLC1 (modulator of VRAC current 1).

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K20070 MLC1; membrane protein MLC1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_07012984_07019146.mRNA True 1452 mRNA 0.48 9 7012723 7019146

Neighbor

gene id symbol gene type direction distance location
CI01000013_06941851_07005817 BTBD11A, BTBD11B, BTBD11 coding upstream 6906 6941851 ~ 7005817 (+)
CI01000013_06915872_06917002 MTERF2 coding upstream 94468 6915513 ~ 6918255 (+)
CI01000013_06850663_06853811 TMEM263 coding upstream 157722 6850663 ~ 6855001 (+)
CI01000013_06817434_06826090 RIC8B coding upstream 186633 6817434 ~ 6826090 (+)
CI01000013_06795895_06815354 RFX4 coding upstream 196526 6795895 ~ 6816197 (+)
CI01000013_07023379_07027997 PANX2 coding downstream 3948 7023094 ~ 7028441 (+)
CI01000013_07036369_07042930 TRABD coding downstream 16265 7035411 ~ 7043035 (+)
CI01000013_07047472_07055840 SELO, SELENOO coding downstream 28178 7047324 ~ 7055923 (+)
CI01000013_07060006_07064836 MAPK12A, MAPK12 coding downstream 40860 7060006 ~ 7065403 (+)
CI01000013_07093361_07101998 MTSS1LA coding downstream 74215 7093361 ~ 7102368 (+)
G81883 NA non-coding upstream 107379 6905056 ~ 6905344 (+)
G81920 NA non-coding upstream 124902 6887493 ~ 6887821 (+)
G81918 NA non-coding upstream 130499 6881956 ~ 6882224 (+)
G81904 NA non-coding upstream 149302 6863202 ~ 6863421 (+)
G81870 NA non-coding upstream 325594 6683582 ~ 6687129 (+)
G81985 NA non-coding downstream 171803 7190949 ~ 7192986 (+)
G82010 NA non-coding downstream 247948 7267094 ~ 7267316 (+)
G82013 NA non-coding downstream 250471 7269617 ~ 7269836 (+)
G82017 NA non-coding downstream 256531 7275677 ~ 7275887 (+)
G82045 NA non-coding downstream 320583 7339729 ~ 7340751 (+)
CI01000013_06076169_06080164 NA other upstream 930356 6075400 ~ 6081684 (+)
CI01000013_06050285_06059640 NA other upstream 953227 6049864 ~ 6060269 (+)
G80845 NA other upstream 2176491 4835078 ~ 4836232 (+)
CI01000013_04051081_04064651 NA other upstream 2946894 4050837 ~ 4065829 (+)
G80062 NA other upstream 3427939 3584008 ~ 3584784 (+)
G81994 NA other downstream 316799 7335945 ~ 7338239 (+)
G82168 NA other downstream 1009192 8028338 ~ 8041343 (+)
G82581 NA other downstream 2310183 9329329 ~ 9334948 (+)
G84005 NA other downstream 2582465 9601611 ~ 9602235 (+)
G84194 NA other downstream 3011462 10030608 ~ 10036953 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013306 mlc1 coding NC_007129.7 CM002902.2 14928040 ~ 14941840 (-)