CI01000013_07148102_07150807 (PDF)


Basic Information

Item Value
gene id CI01000013_07148102_07150807
gene name PDF
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 7148052 ~ 7150955 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_07148102_07150807.mRNA
ATATAAATAGGTCAGTTAAACCCTAACTTCACACGGTGTCATTTTACAGCATGACTGTAACAGTACTGAATGCATTGGTGGCACACGAAATAAACATTACTCCTGACCTTTTTGTGCTCCTCTTTCAACCTCTCAACGCCTTGAGGCAAATCATTACTCCGTTTGACTTTTCCAGTCCACCGATGGCCTGTTTCCCCTGCGCCATGTTCATCGAATCACGGATGTACTGTCAAGAGAGAAGCTTTCCACTGCAACCAGTCATGATCAGGCACTGGTGGACATTTTCACATTGTGTCTTAAGAATTCAGACAAATTATGTACTTCCAAAACCAGTTAGAATACTTTTGCCCTTGTCACCATTCACATGTACTGCATCCCCACGTACTCATTCTACCAACATCAAGATGCGCTCCTACTTACAGTATATGAAAAGGAAAGTCAAAGGTGCACCATCTCCTCCATACAATCACGTGTGCCAGGTTGGAGATCCTGTGTTACGTTCACAGGCTGCGGCAGTAGAACCTGGAGCCATTCAGGGACCAGAAGTGCAGAAGGTCATAAAGACCCTGGTCAATGTGATGAGAAAGCTTGAGTGTGTCGGCCTGAGCGCACCCCAGATTGGTGTTCCTCTACGAATATTAGCCTTGGAGTATCCCAAAAAAATGCTGGATTACAGCTCAGTCACTTCTATTGAAGCTCGGGGTCTGGTGGCAGTGCCCCTTATGATTTTTGTAAACCCAGAGTTGCGTGTACTAGATGGACGCACTGTCATCTTCCAAGAGGCATGTGAGAGTATCTGTGGGTATTCAGCATCCGTTCCACGCTATGTGTCTGTAGAAGTCTCAGGTCTTAATGAGAAAGCAGAGCCTGTCAGCTGGCAAGCGAGTGGGTGGCCGGCCAGAATACTGCAGCATGAAATGGATCACCTCAATGGAGTTTTATATATCGATCGCATGGACAGTAAAACTTTCATTAATGTAAAATGGGAAGAGTACAATGAATAAAGCTTTGGGAACTTTATTGCAACCTTACCTTTGGATTTCAGAGAAAATGGACATTCATATCAATCTTTTGTTATCTGATACATGCATTTTAATCTCAGTTTATCACATTTTCCACTTTTCATTTGCGGATAGTATACGACTATGGAGA

Function

symbol description
pdf Predicted to enable peptide deformylase activity. Predicted to be involved in cellular protein modification process and positive regulation of cell population proliferation. Predicted to act upstream of or within translation. Predicted to be active in mitochondrion. Orthologous to human PDF (peptide deformylase, mitochondrial).

GO:

id name namespace
GO:0008284 positive regulation of cell population proliferation biological_process

KEGG:

id description
K01462 PDF, def; peptide deformylase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_07148102_07150807.mRNA True 1152 mRNA 0.44 5 7148052 7150955

Neighbor

gene id symbol gene type direction distance location
CI01000013_07131096_07141914 NA coding upstream 6010 7130952 ~ 7142042 (+)
CI01000013_07119401_07124434 TSHZ3A coding upstream 23425 7119401 ~ 7124627 (+)
CI01000013_07093361_07101998 MTSS1LA coding upstream 45684 7093361 ~ 7102368 (+)
CI01000013_07060006_07064836 MAPK12A, MAPK12 coding upstream 82649 7060006 ~ 7065403 (+)
CI01000013_07047472_07055840 SELO, SELENOO coding upstream 92129 7047324 ~ 7055923 (+)
CI01000013_07154745_07159568 PECR coding downstream 3790 7154745 ~ 7159608 (+)
CI01000013_07277014_07279249 NA coding downstream 125655 7276610 ~ 7279319 (+)
CI01000013_07286519_07288160 NA coding downstream 135487 7286442 ~ 7288547 (+)
CI01000013_07375912_07390782 MLYCD coding downstream 222863 7373818 ~ 7391003 (+)
CI01000013_07765924_07780475 NA coding downstream 613730 7764685 ~ 7780716 (+)
G81939 NA non-coding upstream 62551 6987893 ~ 7085501 (+)
G81883 NA non-coding upstream 242708 6905056 ~ 6905344 (+)
G81920 NA non-coding upstream 260231 6887493 ~ 6887821 (+)
G81918 NA non-coding upstream 265828 6881956 ~ 6882224 (+)
G81904 NA non-coding upstream 284631 6863202 ~ 6863421 (+)
G81985 NA non-coding downstream 39994 7190949 ~ 7192986 (+)
G82010 NA non-coding downstream 116139 7267094 ~ 7267316 (+)
G82013 NA non-coding downstream 118662 7269617 ~ 7269836 (+)
G82017 NA non-coding downstream 124722 7275677 ~ 7275887 (+)
G82045 NA non-coding downstream 188774 7339729 ~ 7340751 (+)
CI01000013_06076169_06080164 NA other upstream 1065685 6075400 ~ 6081684 (+)
CI01000013_06050285_06059640 NA other upstream 1088556 6049864 ~ 6060269 (+)
G80845 NA other upstream 2311820 4835078 ~ 4836232 (+)
CI01000013_04051081_04064651 NA other upstream 3082223 4050837 ~ 4065829 (+)
G80062 NA other upstream 3563268 3584008 ~ 3584784 (+)
G81994 NA other downstream 184990 7335945 ~ 7338239 (+)
G82168 NA other downstream 877383 8028338 ~ 8041343 (+)
G82581 NA other downstream 2178374 9329329 ~ 9334948 (+)
G84005 NA other downstream 2450656 9601611 ~ 9602235 (+)
G84194 NA other downstream 2879653 10030608 ~ 10036953 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013298 pdf coding NC_007129.7 CM002902.2 14688643 ~ 14691727 (-)