CI01000013_08101166_08105054 (TMEM5)


Basic Information

Item Value
gene id CI01000013_08101166_08105054
gene name TMEM5
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 8101166 ~ 8105214 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_08101166_08105054.mRNA
ATGAGATTCTTTCGCCGGAAAATAGCGATCATAGTTGTTTTGGCTTATGCGATATTTTCACTGTACGCCGCATATAATGTGTTTTTCAATAAGAGGGTTATTTCTCGCGTTCATCGAGTAGTGAAAAAGGGCACTGTGATTTTAGATAATGGAAAAGGAGGAGAGGAAGAGTGGAACCCATGGGAAGAGGATGAGCGTGCACACTCCTTAGTTCTACAAAAGCGAAGAGATGCCTTTAGATCATACCAAGATCATGTTGCTAAAAACAGGCCAAAAACTTATAAAGTTCAGATATGGGGCAAAGCAGCCATTGGCAATTTCTACACAGGGCCAGCGGTGGTCCAAGGGCATGTTTCTCTGGACACAGACAGTGTGGTGCTGGTTTTGAATGGCCGTGAGCAGCAGAAAATCTCCTACTCCATCCAGTGGCTTCAGCATGTCCAGGGTCTGGTGCAGGCCCGCACTGTCTCTCGGGTTGCTGTGGTCCTTTTGGGCAACGAGCGGTGCAATAACGACTGGATCAGTCCTTACCTTAAGAGGCACGGCGGGTTTGTGGACCTGCTCTTTCTTGTGTATGACAGTCTTTGGGTCAATGATAAAGACATCTTTCAGTGGCCCCTGGGTGTTGCCACATACAGGCATTTCCCAGTAGTCACACTTACTGGTCAGATGGTGAAAAATGTAAGACCATACCTCTGCAACTTTCTTGGGACTATGTACAAAAACTCATCCAGGGAAACCCTGATGGGCGTCCTAAAGCAGAATGGCTTGGAGAAAGATTGCCTAATGCATGTTAGAGAGAAGTGGCTTCCTCAAGAGACTGCAGACACCTCCAGACAGTACCAGATGGCATTAGCGCAAAGTGACCTCACTCTTTGTCCGGTGGGAGTGAACACAGAGTGCTACCGCATCTACGAAGCCTGCGCCTATGGCTCTGTGCCCGTGGTGGAGGATGTCCTGACTCCAGGGGCCTGTGCAGTTGGTAACCGGTCCCCGCTCCGACTACTTAAAGATGCAGGAGCACCCTTCATCTTCCTCAAGGACTGGAGAGAGCTGCCTGCCATCCTGGAGAGGGAGAGAGGGATGAACCAAAAAGAAAAAACAGAGAGGAGGATGAGACTGCTGGAGTGGTACAGTGGCTTTCGTCAACAGATGAAGGACAAATTCACAGAGGTATTGGAGGAAGCCTTTTTCAAAATCACCTAGGATTAGTTAATACAGTCTGACATAAGAATTCAAAAGACAGCAAGCAGATGTTATGCATCAACATCCATTTTGATTGTCACTTATTTTTGGAGCCGTTCATTCATTTGGTTTGTATACAGTGATGTTTTACTTGTTGTTTAGTTGTTCTTATACATGTGAA

Function

symbol description
tmem5 alpha-dystroglycan beta1,4-xylosyltransferase

GO:

id name namespace
GO:0005794 Golgi apparatus cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_08101166_08105054.mRNA True 1366 mRNA 0.47 5 8101166 8105214

Neighbor

gene id symbol gene type direction distance location
CI01000013_08095012_08097899 CS012 coding upstream 2633 8095012 ~ 8098533 (+)
CI01000013_08066408_08071727 KLHL36 coding upstream 29194 8065209 ~ 8071972 (+)
CI01000013_08013515_08013676 NA coding upstream 86400 8013515 ~ 8014766 (+)
CI01000013_07970614_07989626 CMIP coding upstream 111410 7970614 ~ 7989756 (+)
CI01000013_07929832_07935997 GAN coding upstream 165169 7929832 ~ 7935997 (+)
CI01000013_08107786_08113703 NA coding downstream 1462 8106676 ~ 8113731 (+)
CI01000013_08139954_08212837 SRGAP1A, SRGAP1 coding downstream 34740 8139954 ~ 8212837 (+)
CI01000013_08216673_08226743 PARP12A, PARP12 coding downstream 111385 8216599 ~ 8227774 (+)
CI01000013_08336335_08399543 HIPK2 coding downstream 231121 8336335 ~ 8399621 (+)
CI01000013_08402498_08414755 NA coding downstream 296588 8401802 ~ 8416190 (+)
G82178 NA non-coding upstream 14150 8083578 ~ 8087016 (+)
G82184 NA non-coding upstream 23864 8074660 ~ 8077302 (+)
G82146 NA non-coding upstream 41341 8011261 ~ 8059825 (+)
G82157 NA non-coding upstream 84800 8015253 ~ 8016366 (+)
G82339 NA non-coding upstream 148170 7952768 ~ 7952996 (+)
G82162 NA non-coding downstream 123513 8228727 ~ 8230128 (+)
G82155 NA non-coding downstream 147499 8252713 ~ 8305402 (+)
CI01000013_08652173_08660558 NA non-coding downstream 503810 8652173 ~ 8661156 (+)
G82453 NA non-coding downstream 595402 8700616 ~ 8700839 (+)
G82503 NA non-coding downstream 728858 8834072 ~ 8846060 (+)
G82168 NA other upstream 59823 8028338 ~ 8041343 (+)
G81994 NA other upstream 762927 7335945 ~ 7338239 (+)
CI01000013_06076169_06080164 NA other upstream 2018799 6075400 ~ 6081684 (+)
CI01000013_06050285_06059640 NA other upstream 2041670 6049864 ~ 6060269 (+)
G80845 NA other upstream 3264934 4835078 ~ 4836232 (+)
G82581 NA other downstream 1224115 9329329 ~ 9334948 (+)
G84005 NA other downstream 1496397 9601611 ~ 9602235 (+)
G84194 NA other downstream 1925394 10030608 ~ 10036953 (+)
G84215 NA other downstream 1971240 10076454 ~ 10079336 (+)
G84250 NA other downstream 2109913 10215127 ~ 10215962 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013287 rxylt1 coding NC_007129.7 CM002902.2 13063210 ~ 13121983 (-)