CI01000013_08308180_08308362


Basic Information

Item Value
gene id CI01000013_08308180_08308362
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 8307851 ~ 8309913 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_08308180_08308362.mRNA
ATGGCACCTCTGACATTTTCAGGGCACTGTCGTACACATGCACGGCTTCATCTTTGTCCAAATTATGAGGTAAAACCAGCCGGAATAGGATTAATTCTCAATCTGATTCTGAAACCAAACTCAACCACAGGCTGTGCCTTGTAAACTGACTACATAGACAGCATTTTAAGCACTGACTCAGAAGGCACCTTCAGTATAATGCCCCAAAAAACTGTACATGCACCTATGATGCCCAAAAATGCTGTCTAGGTAGGCAGCGCACAGTTTCGAGACACAGCCTTAAAGGGATAGTTCATCCAAAAATGTAAATTCTGTCATCATTTACTCAGCCCTCATGTCATTACAAACCTGTATGACTAGAAAGATGTCAGTCTCAATCACTATTCACTTCATCTTTTCTGCATGCAATGAAAGTAAATAGTGACTAAGGCTGTCAGTTACTAACATTCGTTCTAAAATCTCCACAGAAAAAAAGAAAGTCAAAGAGGTATAGGTGAGTAAATGATGACAGAATTTATTTTCGAGGTGAACCAATCCTGTAAGTGACCTCGGGATACTCACAGGAGAACAAAAACAGCTTTTTAGGCTGTTGGTGGATCGATTTCAACCCTTGTTGCGAACAAAAAAATGTTAAAAATGTCTCTTCTATGGATGCACTATATTCCTTTTATTTTCCATGAAGCATTCCTGCACAAGGATTAGTCACCATAACACTGCCGTGTATTAGTTCATCTAAATTACGCCAAACCATTACAACACACACTACACCATTACAATACCATAACAAGTCACATAATAGTAAAATAAGAAAATAGTAAGTGCAAAACCAAGATGTAAATAACTACTAATTTACAGTCATGGTCTATCTATACTGCCTGTTTGATTCATATCCACTTTTCCCTTTCTGCTTCGTATATTAACAAAATAGATCCATATAATGTATATTATATGGTATGAACATTTAGCATATAAAGCAATCTATTATAAAACCTTAATATATTGCAACGATAGCCTCTAAGAATAAACATTAAATGAAGAGACAGCATTGCACAATGAATCAGAGGGAGGTTTGCGGTTTCAAATACATTTTAGTCTTAATCCACAATAATCCTGAACAAATTTAACAACTAACTGATAGTATATCAAGCTAAGGTTTGATCAATAATAATAATTTAACCAAAGCATCCTCTTTAACACAAAAAACAGATTGGTAATAAACCTCAGGACCCGATGGTCTCTCTGCAGAGAGAGTGAATAATGTTAGTCAATTATGTGCAGGTCTGACATTAATTTCACCCTCGTAAGGGCAGTAGATCTTACCTTCGTATACAGGGGCCATCGGTGCAAGGATTTCTGTTATTCATGGCAAAAAATGAAGCGACAGCACTGTTCACAACTCAATAAAAATCTGCCATCTTGAGCCGCGGACAGAATCGCTGCTGTCTCCTGCATTACTAACCCAGTTCATCAGGGAGAGAAAATGGATAAAAAAAATGAAAAATCACATCCAGAATTTCAATTTGATAATCGGCCCCGGGTGCGTGATGAAAAATGGATGTCAGCAACTTAACTCCACGGGTCTCGATGCTGTTTTGGCTCCAAAAAAGAGCCAAATTGCAGGTCTTGGCTTCAGCTGGTGATCATGTCTGTGGAGTGAGTGCCTGCAAAAGTTGCAATGAGAGAAACGAGCGAGTGAACGGAGCGACTTTGCGTTGTAATCGAACGACGAGATAAGCGAACATATTGAACAGGGAGTCTAAATCAAACGACGATCTACTCGATCACGTTCATATAGACCTCATTACCCTTATGAAAACAGCGAGTTCTGTCAAAATACCACTGATATTACATGTATTGCTTACTTACTGTGATGATACCATGGTATAGTGATGGTATTAGATGGAAATACCGTGGTACTTTGATACAGTAAATGTATAATGTCACAATATGCACCCAAAGAGATTCAAATTTTTAAATATTACCATAATTATACATGTCAAAATGACTTAGTATGATACCATGCCCAGATATTTTTATTTTTTTCTACTGCAAACAATAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_08308180_08308362.mRNA True 2063 mRNA 0.37 1 8307851 8309913

Neighbor

gene id symbol gene type direction distance location
CI01000013_08229647_08258878 TBXAS1 coding downstream 48973 8229172 ~ 8258878 (-)
CI01000013_08098898_08099508 UQCRFS1 coding downstream 208343 8098758 ~ 8099508 (-)
CI01000013_08090811_08094235 NA coding downstream 213547 8089673 ~ 8094304 (-)
CI01000013_08080409_08086491 TAT coding downstream 220297 8080360 ~ 8087554 (-)
CI01000013_08072726_08076570 NA coding downstream 230660 8072579 ~ 8077191 (-)
CI01000013_08311120_08328130 NA coding upstream 1072 8310985 ~ 8328343 (-)
CI01000013_08418098_08441411 NA coding upstream 107924 8417837 ~ 8441751 (-)
CI01000013_08555865_08573521 FGD4, FGD4A coding upstream 245295 8555208 ~ 8573521 (-)
CI01000013_08616374_08648611 BICD1A, BICD1 coding upstream 306291 8616204 ~ 8648611 (-)
CI01000013_08732651_08797549 TMTC2 coding upstream 422738 8732651 ~ 8797549 (-)
G83465 NA non-coding downstream 228642 8078814 ~ 8079209 (-)
G83471 NA non-coding downstream 323249 7982184 ~ 7984602 (-)
G83477 NA non-coding downstream 333422 7972740 ~ 7974429 (-)
G83475 NA non-coding downstream 349795 7956962 ~ 7958056 (-)
G83211 NA non-coding downstream 407683 7868770 ~ 7900168 (-)
G83620 NA non-coding upstream 140926 8450839 ~ 8451904 (-)
G83658 NA non-coding upstream 174655 8484568 ~ 8484769 (-)
G83662 NA non-coding upstream 186130 8496043 ~ 8496249 (-)
G83663 NA non-coding upstream 186522 8496435 ~ 8496691 (-)
G83677 NA non-coding upstream 219239 8529152 ~ 8529368 (-)
CI01000013_07339918_07367774 NA other downstream 925491 7339709 ~ 7367774 (-)
CI01000013_05883498_05884071 CHTF8 other downstream 2423479 5882049 ~ 5884071 (-)
G81547 NA other downstream 2563813 5739526 ~ 5744038 (-)
G81032 NA other downstream 3557290 4748809 ~ 4750561 (-)
CI01000013_04561253_04567647 MAP2K1 other downstream 3748948 4560340 ~ 4567647 (-)
CI01000013_09309438_09335834 MICAL3A other upstream 997123 9307036 ~ 9336077 (-)
G85170 NA other upstream 2169948 10479861 ~ 10480700 (-)
CI01000013_10564288_10569141 NA other upstream 2253546 10563459 ~ 10569290 (-)
G85188 NA other upstream 2282291 10592204 ~ 10595337 (-)
G85401 NA other upstream 2725119 11035032 ~ 11035466 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G96679 NA non-coding NC_047600.1 CM018546.1 9417022 ~ 9417414 (-)