CI01000013_08402498_08414755


Basic Information

Item Value
gene id CI01000013_08402498_08414755
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 8401802 ~ 8416190 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_08402498_08414755.mRNA
GATTAAAAAGCAGTGGAGGGGAAATCTAGAGCAGAGGCTTTGAAGAACAGATTTTCTCTCCCCTCACCAGTTAGATCTGTGTGTATATTTAATCATAGCTTTAGCGCAAAGAGGGATCATTATCTGCTGCTAATGAGACTGAGCAAATTCAATGAATTGAAGGGTCCTAGCATTGATGGGAGACTGTAACACAAGAGCATTGATTGAAGCTTTCTCACCTCCTCTTTCCTCTTCCCTCACGCTCAATAAGTCATTTTATAGAACATGCCTGAACCCTAATGCCATCTACAACATCTAATAGAGCGTTTTTGTTAAAATTGCAGAATAGGGTTGTGGTATTCGCTCTAAGAAATTACTTGACATCAAGCATGCTTCCTGTGCCTGAAGTTTCATCAGCTAATATTTTTGTGCATCCATCCTACATATTAAGAAATATTTTAAGGAGTTTATGTTCATCATTTGCTATTCTTTGAAATTTTGCCCCACATCCCTCTCATTGTTGTTCCACCCAATCCCCACACCCACTTCCTCATGCTTTTTTTGTTCGTCTTTGTTTATTTGTTTGTTTGATCCCATCGGTTCCTTTAGGCCACCAACCTGGCTCCCTCTTCCACCAGTGCCACCCTTTCCCTTACCAATCCTGATGTCTCCATACTAAATTACCAATCTGCACTCTACCAGCCTTCTGCGGCCCCCATGGCTGCCGTGGCCCCCAGGACCATGCCCCTCCAGCCCGGTGCGCCACAACTCTGCGCCGCCCGACCCGATCCCTTCCAGCAGGCCCTTATCGTCTGCCCACCTGGCTTCCAAGGTTTGCAAGCATCACCCTCTAAACACACTGGCTACTCAGTGCGGATGGAGAATGCAGTTCCCATAGTAACGCAGGCCCCTGGTGCCCAACCTCTACAGATCCAGCCAGGCCTTCTGACACAGCAGGCCTGGCCGTCTGGTACTCAACAGATTCTCCTTCCGCCAGCATGGCAGCAGCTCACACACACTTCAGTGCAACACGCCACCGTCATCCCCGACTCCATGACCAGTTCGCAGCCTCTGGCCAACTGGAGGAATTCACATCCCCATGGCAGCCATTACAATCCCATTATGCAACAGCCAGCCTTACTGGCAGGTCACGTCACCCTGCCCTCTCAGCAACCTCTCAACGTGGGCGTGGCTCATGTCATGAGACAGCCATCAAACAACAGCTCCTCCTCCAAAAAGAACAAGCAGCACCAGATGAACAACAGGAATGTGTCAGCATACGACGTGGCCTCCACTCAGCCGGTGACGTCACCACAGCGCTCCAAACGGGTGAAGGAGAACACCCCTCCTCGGTGTGCCGTGGTTCAGAACGGCCCGTCTTCAACCTGTGCCCCATCACAGACCTGCGGAGGTGGTGGAGGAGGGGGATGGGGAGGCGAGCAGGCATGTAGCACCACTCGAGACCACCACGGTCAACACAACCCTCCACGTCAAACCATCGTCATCCCCGACACTCCCAGCCCGGCTGTCAGTATCATCACCATCAGCAGCGACACGGACGAGGAGGACGACCTCAAACAGCCCACTAACACCAGCACGTCATCTAAACAGAGGAAGAATGTCATCAGCTGTGTGACGGTCCATGATTCCCCTGACTCTGACTCCAGCAATACCAGCCCTTACGCTGTGGAGTCTCGGCCTAACGGCCCCAACGCCAACAGCTACGACTCCAAAGGTGCTGTCCTGGACAACTACAGCAACGGGAACCCCCGCACCATCATCATCCCCCCACTGAAGAGCCAGACCAGCGAGAATCTGGGAGAGTGTGATAGACTCTTGCCTGACACGGTGAACCACCAGAACTCTACATACAAGTTCAAAATCTCCAATGGGGGCTTGTCTGGCAACAACCACTCGTCGGGAGGCTTGGCTGGAGGCGGATCATACCGGCAGCAGCGCACGGGGCCACACCCCTTTCAGCAGCAGCCTCTAAATCTCAGCCAGGCCCAGCAGCACATGGCAGTTGAGTGCAACGGAGGTCACCGGCGACAGCAGGCCTACATCACCCCCACTATGGCCACCCAGGCTCAGTACTCCTTCCACAACAGCCCCACCCACACAGCTAACGTTCATCCCCACTTGGCACCTCCTCATCTGCCCGGGCAACCACACCTCTACACCTACACTGCCCCCACGGCACTGGGCTCCACTGGCACGGTGGCCCACCTGGTCGCTTCGCAGGGTTCGGCCCGTCACGCAGTCCAGCACGCCAGCTACCCGCCGGGCATCGTCCACCAGGTGCCTGTCAGCATGGGCCACCGCGTGCTGCCCTCGCCCACCCTGCACCACAGCCAGTACCAGGCCCAATTTGCGCACCAGACCTACATCAGTGCTTCTCCTGCCTCCACTGTCTACACTGGATACCCGCTGAGCCCCACCAAGATGAACCAGTACCCTTACCTCTAAAGCTGAAACACTGGAGCCCAGCCAATCGCTGCTTACCATTTCTACCCTTATCCCACCTAGAGACAGAGAGACATGCTGAAGCCTATCGACCCTTAACCCCATCCCCTTGTTCCTTTCATGCTTAAACTTGAAGACAATGAAGATGCCGATGGATAGAGGAAGTGTACTCTCAGAGGGAACGGAAGGGTACTGAGGAGCTTTCTTTTTTTGATGAGTTTTATTTTGCCTTCTCAAAAGGGCCAGTTAACAATTTATTTTGTGATCTGGAGGTTTTGTTTCTTTTAAAACAGAAGTCGAAGAAGAAGTTCTTGCTTTTGTTAGTTTCTAGGTCTCATCAACAGGCCGTTTGGGAGAGACAGAGTTTCGTTCGACTGAGATTTTGTTTGCTTTTCCCTTTCTTGAAATCATTCACGACTGTTGAGCCGAGGTCACGACGTGGATGTTTTGAATTCCTACGAGATTTTTTTTTTTTTTTTTGGATAAGGTGAAATACGGATATCTGCTGCTCTTCAAAGAAAAAAAAAACATAACGATGGCCTTGAACTGTCTTAAACTTTTCCAAATTACTTGCGGCGAGCGGTATTGTGCATACTCCGCCGTGCTCTCCGACAAAAACACCTGGAGGAATCTTCTGGAAATAGGACGACAAAACTTTCTAGTGTATTTATAGACTTTTCTTTGTTTGTGTTCACATTTAGAAAAGAAAATACGTTTGTCATACCGTAGAACATTAGCTGGGCCCCTCTTTGTAGAATGTAGCAGTCTGCACCCGTTGATTTAATGAAGAACCTTTCTTACACCAATAGATTCTTGTTTTTCCTCTTTCAATGTGATTGCACAAAGTGGTTACAATAACATAGGCATGTTCAACATGGTAGTCGGTCGTGCGTTTGCGTGCATGTGTGCGCTCAGCACATCTGTGCGACGTATTCCTCCACAGTCTTAGGTTTATCATTGTTACCTCGTAGTGCCTTACATATATTACGACAGTTTACTTGGCTGGAAACCCTCTAGAACCAGATGCTAGTCAGAGAGTTGGCTCCTAGGTTGAACATCTTCATCCGAGCTCTTTCGTGTTTTTTTTTTGTTTTGTTTTTAAGTTCCAGGTGTAAGCATTAGCCCTAAACGTTATTTAAACGCTTCTCGTTTAGCGTGCATGAGATCTTTTACATTTAAAGATACTTGCCTGGGGTAATGAACCAAAGTTGTCATTTAAAGATAAGTAACTTTTGTTCTGGATAGTGGATATAATTATATATAGCGTATTTACTGTACATACCGTAGCTATGCGTTTTAGTCACCTTGCAATCAATGCGATGTCACTGATTTTAGGCTGTATATGTCATAAAAGGGAGACTAAATGAATATTTCATGGGAAAAGCCAAGTATCGTTCAATCAGTTGGAGATTGGGCTGCACAGTTTGTTTAAAATTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_08402498_08414755.mRNA True 3880 mRNA 0.49 8 8401802 8416190

Neighbor

gene id symbol gene type direction distance location
CI01000013_08336335_08399543 HIPK2 coding upstream 2181 8336335 ~ 8399621 (+)
CI01000013_08216673_08226743 PARP12A, PARP12 coding upstream 174028 8216599 ~ 8227774 (+)
CI01000013_08139954_08212837 SRGAP1A, SRGAP1 coding upstream 188965 8139954 ~ 8212837 (+)
CI01000013_08107786_08113703 NA coding upstream 288071 8106676 ~ 8113731 (+)
CI01000013_08101166_08105054 TMEM5 coding upstream 296588 8101166 ~ 8105214 (+)
CI01000013_08448494_08481411 NA coding downstream 31085 8447275 ~ 8482911 (+)
CI01000013_08485928_08493559 NA coding downstream 69211 8485401 ~ 8493623 (+)
CI01000013_08519555_08527531 FAM107B coding downstream 102920 8519110 ~ 8527711 (+)
CI01000013_08530191_08551478 NUP205 coding downstream 113159 8529349 ~ 8551621 (+)
CI01000013_08652173_08660558 NA coding downstream 235983 8652173 ~ 8661156 (+)
G82155 NA non-coding upstream 96400 8252713 ~ 8305402 (+)
G82162 NA non-coding upstream 171674 8228727 ~ 8230128 (+)
G82178 NA non-coding upstream 314786 8083578 ~ 8087016 (+)
G82184 NA non-coding upstream 324500 8074660 ~ 8077302 (+)
G82157 NA non-coding upstream 385436 8015253 ~ 8016366 (+)
G82453 NA non-coding downstream 284426 8700616 ~ 8700839 (+)
G82503 NA non-coding downstream 417882 8834072 ~ 8846060 (+)
G82526 NA non-coding downstream 494207 8910397 ~ 8910626 (+)
G82557 NA non-coding downstream 566033 8982223 ~ 8982501 (+)
G82168 NA other upstream 360459 8028338 ~ 8041343 (+)
G81994 NA other upstream 1063563 7335945 ~ 7338239 (+)
CI01000013_06076169_06080164 NA other upstream 2319435 6075400 ~ 6081684 (+)
CI01000013_06050285_06059640 NA other upstream 2342306 6049864 ~ 6060269 (+)
G80845 NA other upstream 3565570 4835078 ~ 4836232 (+)
G82581 NA other downstream 913139 9329329 ~ 9334948 (+)
G84005 NA other downstream 1185421 9601611 ~ 9602235 (+)
G84194 NA other downstream 1614418 10030608 ~ 10036953 (+)
G84215 NA other downstream 1660264 10076454 ~ 10079336 (+)
G84250 NA other downstream 1798937 10215127 ~ 10215962 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location