rfk (rfk,LOC107723557)


Basic Information

Item Value
gene id rfk
gene name rfk,LOC107723557
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172275.1
NCBI id APWO02001873.1
chromosome length 651960
location 384455 ~ 394189 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU376965
GAAGGTCGGGAACCCCGGTGTTCACAGTACCGAGTTGTCAGTCCGCCGTGTGAACACACCACTGTAGTACAGAGCCTGGAGGAGCTTTAAGAGCTTTAAGAGCTTCTCCCTGGGATTAATTCAGTTTATTCCGGATTCAGACTCCCGGTTATTACAGTTAGCCGGTTTTATTTCAGTTCCTGTAGCCCCACAGCGGCGGGTGAGCTCTAGAAGGATCCACAGGGTCATCACTGAGATATAACTGAGCTAGGTTAGATCACCGCCAGTCGGGTTCTCCCGGAGCTCAGAGGAACCCGACCTTCTCTaatcatcaccttcatcactGATACTGATACCGGAGAACCGTGGACATGAGGAGCCTGCCGTACTTCTGCCGCGGTCCGGTGATACGAGGTTTTGGAAGAGGGAGTAAAGACCTAGGAATCCCGACAGCAAACTTCCCAGAGTCAGTGGTGGACAGTCTTCCTGCTGACATCAACACAGGCATATACTATGGCTGGGCACAGGTGGACAACGGAGAGATCCACAAGATGGTGATGAGCATAGGCTGGAACCCGtattacaaaaacacaaagaaatcaatGAGGAATTGATAGCAGCGATTCACAGCGATATTGAAGAAGCAAAACAGAAGCTGGACTTGCCCGAACATTTGAAACTGAAGGAGCACAACTTTTTCAGGACCTCTATATCCACAACAAACAGTGAGATCATGAACGGTCACTGAACTTGAAAGAGGTCACTTGCCTGTTGTGCCCCATCTTTCATTAACTTCGGGATTGCCAGTATTTTCTTCATATTTGAATCTGTTCTTTAATGTAGTTTCACGCAGTAACTACAAGATTTAACAGAATGcacttttcatttaatttaatttaatttatttttttgttttttagtcatTGCAATGTAAACATAATTCAGGGTTGGTTTTGGTGTGAAATAGTTAATTGTAATGAAACTTCAGATTTCTTGGCAGTGGTGGTGAATGGAACAAGGCGGCAACACGGATATAGCCGTTTTTTATCTTCCAAAGCTACCTCTGATTTTAAATGTGATGTACGTACGTACACCTCCGAGTTTTATATGTCATGTTGATGATGGTACGTTAGTGGCAAATCTTGAAATTTTTACTTGATTTATCTTCTGCTTGTAAGGTAGGCTGGGCTTAAAGATACTCTTAGCTAGAGTTCTTGTTGCGTAATCTTACACTTGATAGGCATTGTTGATTAAGGtgttgtttattgtgtgttgtgaATTGCAGGGGCGTGGCTTAATGCCTGCATTTTTTAGATAAAtgaagggcgttttcacacctgtaatcaGTTTCcccttcagtttggtttggtttcacacacaccaaaatgtgACCTAACCAACCACACAAgcatgtctcctctgattgatTAAAGTTGTTTTCAGAAGCAAGAAGTTTCTGTGCAATGTAAAGCTGCATTAACACTGATCACGGAAAATTTGCAGTACACAGTACACAGAGTTGTGTGGCAgcgagcagtgaatgctgcacacactgcgttcagtgtaaaaacagtttagcttggagcagcagcagagacagcgtttgttcataacTGTAGTAATGATCTGGCTAtaatatatcaggttaaactgtaCCTGAACAGCAGTAATAAATCGAGatgatcgagaccagatcagaTTCACACCACAAATGAACCACTCCAGAGTTCACTTGGAACCAAACCGAGACCAACTCCTCTCGCAGGTCTCGGCGTGGTTGTTTTGGCCTGCACCCAAGTGCAATTACTGATTTTACACCTGCTGAAACAAACCGCCCCAAGAAAGCAAACGAAACGAGTCCATTTTATCGGATCACATAGTCCTGTGTTATCTGCTACAGAATTAATtgtgtttgctgtttttgcttAATTCAGCTTGAGTATCTAAAGTGTAGATTCTGTTAGAACTTCTATCTGTTAGAAAAGCTTGAGCTTGATGGGCCCAATGATTTTGGGTATTCGTTTCCATATAATGTAATTAGGAGTGTAACGATATTAAATGCAAAAAAGGCATACGGTTTTGTTCATAATGCAGTTTGGACTTCACAGTTCACATGAGTACGGTACAAAGTGgaaactttaaaatgtattttatttaaattagacaAGTTACAGTCTAGTGCCGTACCTCCTGAGGTAGTTACAGCCTTTAGTTTGTCACAGCCTCTAGTTTGTTAATCAAGCTTGTTTGGTGTGTTTCTGCACAAAGGTTCAGTACACACCCAAAAACAAGCATTCAAATGATCTTAGTCCAGTTTACCACCTTTTTATGAGGTAAAATAGTCATTTCAAATATGAAGATAAGAacagtgaaagaaaaaagaaagcaattaaaaagaagtttgTGTCAATCTCTCTTCAAATGCAGCAGCCAGAGAGAGataggaggaggaagagagtgGCAGAGGGGACATACAAGACTACAGTTTCTCCCAATGCAATACTCCCAAAATCACTGCAGTTCCCACAATACCGTGCAAATCTATCAGTTTACAGCTTAATGTTTTTGGCTGGCATATGTGGTCTGGTGAAACTACCATATTTACCCTAATTGTGAATATTGTGTATTCTCTTTGCAACCAAAGAGATTACCAAACCATGACCCCAGTACCATACATATTCATTTTCCAATACATGTACCATTTTGTTATATATGTAACTTAACTGTCTGTGAGGTTGTGTCCCAATTACCACTGTTGTAAATGACATTGTAAATGCATTTCATACCAAAACCAAACCACTCTGATTGACTAATTTCGTCTTAATGATGGAATTATACATAAATAGAAATAGCTTCTTTAACAAACAGGAATTTCTTTCAGCCTGACAAATCAAAGCTAGTTcaggtatattatatattcagatGTGCTTTAGATGAATGTTAGTCACAGTTAACGTGTTCACATTGGGAAAACCTTGTGTaaccatgtcttttttttttgttttgtttttttttgtattacattTAACGTATGCTCTACTTGTTTCAATCAAAACTTGATTCTACCTGGATAAAAAAGCTTTTAGAAGGTGTGCTTCAAATGATGTAAACATATCCATTATATTTAGTGTATTGCTAGCCACTCTGGCctgttatatacattttaatgtgtttgccTGAAATATTTGCATTTCTATAATGCTTGTGTTCATACGATTGCTAAAGTGCGTAAAGCACAGTGCCTTAAgcgtaaaaaaagaaaacactattCTAATAAAAGAACTCTTTTAGGAACTCTTTTAGGCACAAACATCAACAGAAAGTTGAAGTGAGGAATGTTGTTGAAGCATCCCATTTCAAATCTCATTTATTCTCCAGTAGTTAtatgtgtttaatatgttttacaATAATATGTCAGTGCTTTAAAGTCAACTGCCTTTTATATAGTGTTAACAATTCATGATTAATAGACCAATAGATAAAACCAAAATGACTTGATGTTGAGTCAAGTCCCAGTGGTTCTATGATGTACTTGTGCAATGCATGTTGGGTACTGTAGTgagaaaataaaagtacatGACTATTACTGAATATTACATAACATGGCAATCAAAACTAAGAATAaattatggaattatttaattatttaattagacAATTTACTCTGCAGCTTTTAAAATGAccttaaaaatagttttagctAATAAAGCTAAAATAGAAATTAGATCATAGAAATATGGTCAGACTAGTATAAGAAGTTTATTTGTGTCTGGAAATGTCTACAAAGCCTTGAGAAGACTGAGGATTTTGCCTTGAAAAAGAAGCACATCTCCTATTcagaaattgtttttaattttaatgactttttgtttatattttttcatgtcAAAATGTAGTTGTGTCCATAAGTAGTTGGACAGTGACACTATGTAATTTTGCCC
>XM_007260155.3
aaagtagGTGAAGAGGAACGACGCAGACGAAGGTCGGGAACCCCGGTGTTCACAGTACCGAGTTGTCAGTCCGCCGTGTGAACACACCACTGTAGTACAGAGCCTGGAGGAGCTTTAAGAGCTTTAAGAGCTTCTCCCTGGGATTAATTCAGTTTATTCCGGATTCAGACTCCCGGTTATTACAGTTAGCCGGTTTTATTTCAGTTCCTGTAGCCCCACAGCGGCGGGTGAGCTCTAGAAGGATCCACAGGGTCATCACTGAGATATAACTGAGCTAGGTTAGATCACCGCCAGTCGGGTTCTCCCGGAGCTCAGAGGAACCCGACCTTCTCTaatcatcaccttcatcactGATACTGATACCGGAGAACCGTGGACATGAGGAGCCTGCCGTACTTCTGCCGCGGTCCGGTGATACGAGGTTTTGGAAGAGGGAGTAAAGACCTAGGAATCCCGACAGCAAACTTCCCAGAGTCAGTGGTGGACAGTCTTCCTGCTGACATCAACACAGGCATATACTATGGCTGGGCACAGGTGGACAACGGAGAGATCCACAAGATGGTGATGAGCATAGGCTGGAACCCGtattacaaaaacacaaagaaatcaatGGAAACTCATCTGATCCACAAGTTCAAAGAGGATTTCTATGGTCAGATACTGAGTGTGGCTATGGTGGGATACATTCGCACAGAAAAAGGATTCAGTTCACTTGAGGAATTGATAGCAGCGATTCACAGCGATATTGAAGAAGCAAAACAGAAGCTGGACTTGCCCGAACATTTGAAACTGAAGGAGCACAACTTTTTCAGGACCTCTATATCCACAACAAACAGTGAGATCATGAACGGTCACTGAACTTGAAAGAGGTCACTTGCCTGTTGTGCCCCATCTTTCATTAACTTCGGGTAAAGCTACTGTAACATATgcattaaatcattatttttgtactttagaTCGCAGAAAGGTTTACATCGTACATTGTTGAATAGTGCTGGCACTGACTGCAGAGTGAAATTTGGTTTACTGTATAGAAGACAGAAAGCCAGTGTTTGTCATGAGAGAAAGTTCAAACTCAAGGTTAATGGCACCTTTTCAACCAGATCTTTGTTGACACatcagtttaaaatgataaaaatgatcagtACCAATTATAAGTACCTCAACTAAATTTTGTTAAAAGTTGTTTTGTTGCCTGAAAGGTTCTCTTAGCTCACATTTGCTCAACAATACAGTTAAAATTGAACTTCAAAACTTTTGTAAATGTTCTTCAGGTTCAGTTGCTTAAATATTGTGTAAGATGTTTAGTCTGTGTTCCTCCCTCTGATGGTGTTGCATCGTTTTTCTCCATGTTGTCTCCACCGCGGGTTACAGTTTCCTCTATCGCATGGGTGGAAGGCCTTCCTATTGTCTGATTCTTGACCATGGAGGGCTGTGGTGATGATCTGATGATCTAAACTTTTTATCTCTTGTTCAGGGGTAAGCAATGATGGACAGGATGGACAGATTCTTTCACAGTTTTGTGGTTTTCCTTCTCAAGCACACCCGATTCAGCTCACTAGCTAAATGACAGTTTTAGAAATCTGTTTCAACAGCGAAATCAGCAAACAGTGCCTGACCCTCTTTGCCACCTTCTTTCCACCTCTAGACTCTTGACAagcaggcagttagacagttgcacCACTTTAGAGCTGTTAAGCTATgtaatgtacatatccaaagaATGAAAAAGCAATTTTGCGTAGAACTTTGTTTTTATGTAGTGTAACTTCACAAGCATAGagtggccctacagtctaactgctgctcaGTAAATATAAAGAGATAATTCGTATAAATTCCAGCAATGGCTCAGAGCTTCACTGACCACCTCAATCTCAACCTGTAGCTgtttataaacagaaaacagtaaaaaaaaaaaaaaaaaactgaggacCTTCA

Function

symbol description
rfk Predicted to enable riboflavin kinase activity. Predicted to be involved in FMN biosynthetic process and riboflavin metabolic process. Predicted to act upstream of or within riboflavin biosynthetic process. Predicted to be active in mitochondrion. Orthologous to human RFK (riboflavin kinase).

NR:

description
riboflavin kinase

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0009231 riboflavin biosynthetic process biological_process
GO:0008531 riboflavin kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU376965 True 3920 lncRNA 0.38 4 384483 394189
XM_007260155.3 False 1941 mRNA 0.43 4 384455 389261

Neighbor

gene id symbol gene type direction distance location
LOC103029345 NA coding upstream 133845 249084 ~ 250610 (+)
nkx6-3 nkx6-3,nkx6.3,LOC107726306,LOC107548267,LOC107683904,LOC107702846 coding upstream 267794 111254 ~ 116661 (+)
adamts13 adamts13 coding downstream 127090 521279 ~ 569495 (+)
ddx51 NA coding downstream 196164 590353 ~ 605255 (+)
golm1 NA coding downstream 222001 616190 ~ 635257 (+)
G274946 NA non-coding upstream 4112 379702 ~ 380343 (+)
G274942 NA non-coding upstream 9797 373589 ~ 374658 (+)
G274906 NA non-coding upstream 125411 252311 ~ 259044 (+)
G274907 NA non-coding upstream 128674 254775 ~ 255781 (+)
G274896 NA non-coding upstream 168496 215107 ~ 215959 (+)
G274949 NA non-coding downstream 4177 398366 ~ 398598 (+)
G274950 LOC108426615 non-coding downstream 4614 398803 ~ 399416 (+)
G274951 NA non-coding downstream 14598 408787 ~ 409039 (+)
G274952 NA non-coding downstream 18213 412402 ~ 414963 (+)
G274954 NA non-coding downstream 21643 415832 ~ 416141 (+)
G274945 NA other upstream 5281 378794 ~ 379174 (+)
LOC111189882 NA other upstream 276086 104420 ~ 108369 (+)

Expression


Co-expression Network