G274953 (LOC108426724,LOC108265340,LOC107691576,LOC107565112,LOC106580079)


Basic Information

Item Value
gene id G274953
gene name LOC108426724,LOC108265340,LOC107691576,LOC107565112,LOC106580079
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172275.1
NCBI id APWO02001873.1
chromosome length 651960
location 480129 ~ 519326 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU376991
TTGGAATGAATAGCTCAGAACCTTTATTCAGAGGGCAACAGGAGTTCAATATAAAATTGCGGGATTCTTTTTATGTTGACAACCTTGGAGCCAGTGTAAAGGAGAACACTTTCCCTTTTATCGTGGCAAACCCCACCATGTAACAAGCATTTAATGCTTTCATTTCCTTAAAATTAACCTCTCCCATAATCCCCCCATCTTCTCCCCTCCTCCTCTTTTCTTTCCACCATCTCCCTCAAAAGTTTTCCTTTTCGCTACATctttgcagtttttaaaaagtaaacaaaagcaaaaaaaaaaaaaaaaaaaacatccttcaaaaaaataaaacggaGCGACCACAACTCATGTTCGGctttttaacatttacagtatatataaatacttacattaatattttacatgaaACACCGAATTGggaggaaagaaaaacaaacaaaagaaataagCAGAGGAAAACTTTGGAGGGGGTGGGGAGGGTAGGGAGagattgtgtgtgagtgtgtaagtgtatgtgtgtgtataatgtgtgtttcAGGCCAGCTGCAGGACTGAAGGTTGAGAATTGGACTGTTCACATAACCTCCAATTTCCGATCAGTTGGCCCAGTAGGGGGAGCTGCTGTAACTGGATTTGCCTTGGCTCTTCTGCATGCTGCTGGACTGATTGCGTGGAccCTGTGTGTCCTGGGCCATGTGGTGGTGTAGCAGCTGAGATGGGGGCTGCTGATGGGGAGGCAAGATGTGAAGGAAGGGGGCAGGTGCATAGCCAGGAGCTCCGCCAGGGTTTAGGGGTCCTGTGCCTCCCAATGCAGACGGCAGGCTGAACGTTGCAGGGGTCGCTGCAGGGAAACCCTGCTTATCAAATGACTGGGTCTTGCTGTACACTGCTGCACCAAGATCAGAGCTGGCAGAACCTGATAATCCAGGTGCTTTTCCTGCACTATTGCTGGGCTTGGCCTGTGACTGCGAGCTGCCTCCATATCCTCCTTTCCCATAATCTCCTCCTGCGTGAGCCTGAGCCAGATCATCAAAACCTGAAGCATAGGCGTGCTGACCATAGCTGGCCTGGTGCTGGTACTGGCCAGTTGGCCCCATTGCGTGTTGCTTTGCTGAGGCCTGGGACATGAAGACTGTGGGACCGTACTGGAAGGCACTGGGCACACCTGGCACACCAGCATAGTAGGGCAGGCTTGTGTAACCATAGCCAGGGGGCAGAGGGGGGTTGAGAAAAGCCTGGCCGGGGTTCTGTGGGCCCTGTGTTTGAGGAGGAACCGTGCCTGGCTCTGACTGGGATTGGGCGACTGAAGAAAGGCTGGTCGTGGGTGCCGGAGAGGCTGCTTCACCACGCGTAAACTTGGTGGCTTCACCTGAGTAGGGGTTGTTTGCTAGTCCTCCATCTCTGGCAGCAAGGGGGGCAGTGCCAGGGAAGGTGGCCATCCCATAATAATCCTGCAGA
>TU376993
TTGGAATGAATAGCTCAGAACCTTTATTCAGAGGGCAACAGGAGTTCAATATAAAATTGCGGGATTCTTTTTATGTTGACAACCTTGGAGCCAGTGTAAAGGAGAACACTTTCCCTTTTATCGTGGCAAACCCCACCATGTAACAAGCATTTAATGCTTTCATTTCCTTAAAATTAACCTCTCCCATAATCCCCCCATCTTCTCCCCTCCTCCTCTTTTCTTTCCACCATCTCCCTCAAAAGTTTTCCTTTTCGCTACATctttgcagtttttaaaaagtaaacaaaagcaaaaaaaaaaaaaaaaaaaacatccttcaaaaaaataaaacggaGCGACCACAACTCATGTTCGGctttttaacatttacagtatatataaatacttacattaatattttacatgaaACACCGAATTGggaggaaagaaaaacaaacaaaagaaataagCAGAGGAAAACTTTGGAGGGGGTGGGGAGGGTAGGGAGagattgtgtgtgagtgtgtaagtgtatgtgtgtgtataatgtgtgtttcAGGCCAGCTGCAGGACTGAAGGTTGAGAATTGGACTGTTCACATAACCTCCAATTTCCGATCAGTTGGCCCAGTAGGGGGAGCTGCTGTAACTGGATTTGCCTTGGCTCTTCTGCATGCTGCTGGACTGATTGCGTGGAccCTGTGTGTCCTGGGCCATGTGGTGGTGTAGCAGCTGAGATGGGGGCTGCTGATGGGGAGGCAAGATGTGAAGGAAGGGGGCAGGTGCATAGCCAGGAGCTCCGCCAGGGTTTAGGGGTCCTGTGCCTCCCAATGCAGACGGCAGGCTGAACGTTGCAGGGGTCGCTGCAGGGAAACCCTGCTTATCAAATGACTGGGTCTTGCTGTACACTGCTGCACCAAGATCAGAGCTGGCAGAACCTGATAATCCAGGTGCTTTTCCTGCACTATTGCTGGGCTTGGCCTGTGACTGCGAGCTGCCTCCATATCCTCCTTTCCCATAATCTCCTCCTGCGTGAGCCTGAGCCAGATCATCAAAACCTGAAGCATAGGCGTGCTGACCATAGCTGGCCTGGTGCTGGTACTGGCCAGTTGGCCCCATTGCGTGTTGCTTTGCTGAGGCCTGGGACATGAAGACTGTGGGACCGTACTGGAAGGCACTGGGCACACCTGGCACACCAGCATAGTAGGGCAGGCTTGTGTAACCATAGCCAGGGGGCAGAGGGGGGTTGAGAAAAGCCTGGCCGGGGTTCTGTGGGCCCTGTGTTTGAGGAGGAACCGTGCCTGGCTCTGACTGGGATTGGGCGACTGAAGAAAGGCTGGTCGTGGGTGCCGGAGAGGCTGCTTCACCACGCGTAAACTTGGTGGCTTCACCTGAGTAGGGGTTGTTTGCTAGTCCTCCATCTCTGGCAGCAAGGGGGGCAGTGCCAGGGAAGGTGGCCATCCCATAATAATCCATGGGCAGACGGGACTGCATCATCTGTAGGTCTTCATAGCCATAGATCTGGGGGTATGCAGGAAGCAGTCCTCCAGGACCCATGATGTACTGATTAGCCAACAGAGGTGGTACTCCTTGAGCTAGATTGGGTGGAGCTTTACCAGAGGTGGTGTTGGTCTGCATTGGTGCAGAGCGAGCCGTGGAGGGAGCAGAAGGGCCATTGGTGGTAAGCCCAGGAGCGCCTGTGATTAGACCATTGGAGTTGACAACTGAGCTTGCAGAGCTGACTGTTGATCCAGAAGGGAGTGTCAACGGACTTCCGCTGACATCACTGGCCATGCTGAATGCAGTGCTTGTGGGGGCATTAGAGCCTAATGTAGCTCCACTGCTTACATGACTGTTGTGGGATGGCAGAGCGGTGCTTGGAGCAGGGGCTGGTGCAGACGATGGTGGTATGGTTGACGAGGGCATAGTTATAGACACAGACTGAGGAGTGCTTGAAACaaCATCTTGTGTACTGGACGTTCGTACCTCACCGTATCCATTTGTGAGAGGTGCagtggaggaggtggtggtggagtCCTTGCACAGCCTTGAGGGTTCTGTTCTAGTGGATGCTGAGGCAGCAGATGCTGTAGCAGTGGCTAAGCCCAAAGATGGAGAGGGATATCTGGGCTCCATTGCTGTTGTAGGCAGAGCAGGCGGAAGACCACTCAATGGCTcaCTAACAGTGCTGGGTTTGGAGTACAAGCTGCTCTGCGTTGGTTGAGCAGTAGGTGCCATTTCCTGACTGCTTGCTTCTGACTGGCTGGGGCTCTCCACAGCAGACTCTGAGGCAAAATCCAGGGCACCAAACTGCACATTCAACCCAGACACATCAGCAGAGCCTGGCATCTCCACTGCCGAAGACGGAATCTTAGACGGAGGGGGCAGCCTGCGCCTCTGTGGCCTGATGTGTTTGGGCTGAGAGGCTTCAGCTATTGTGGGGGCGCTGGTCTCCACCAGGGTTTTCAGCACAGGGGATGGGTTGTTGTGAGGGGGCAGGGGGGGAGATGGATCTCGTCCCTGAGCCGGCAGGTCCGATTGGAGGATAGGGTTGTGGTGCTGGGTGAGTTGACTGAGAATAGGGGAGGGGTCGGGCTGGGCCTTCAAATCCAAGTGGCTCAGTGTAACAGGGATCTCCGCCTTGGGTTCACTCAAAGCCAAGGGTGCAGGTGCAGGTGGGCTGGGAACGCTGGATTCTGCAGCTGAGCTGCCATTGGTCAGGGCAACTGTTATCTGACTGGACAGAGGAGCAAGTCGGGGGGTACTGATTGGATCAGCTTTCTGTACATCAGGTTGGGGCACTCTGGAGCCTAAAGACGATGCAGCGTGAGCAAAAgtgccagcagcagcagcggcataGCTGTTGGCAGCGGCCGAGgcgtagctgtgtgtgtgtgttcggccTGTGTGCTGTTGAGAGTTGGTGAACACCAGGCTCTGCATGAGCGGCTCGGGAGACGCTGGCTCCAATCCAGCCAGCTCTGAATCCACCTCTGTTGCTTTAGGCAACAGAGAATTCAGATCCACCCCCTGGCTAGTTGCTGTGTGGTTCTCCGATGCAAGTACAAAGGAGGCAGTGAACACTTTGGTCTCAGAAAGATCTTCATTCCAGTCTTCTGCAGCCCATTCTTCCAGATTACTTCTCCAGGTTCCTGCAGCATCAGTAGTGTCATTGACTGCCTCTCCTGATTCAGCAGGGCCAGTGTAATCAGCAGGATTAAACGTCCCCATTCCCTGAGAGAATCTACTCACACCAGTTCCTCTGCCTCTCCCTCTGCCTCCTGCACCTCTGCCTCTTCCTCTACGTCCACGCTCTCCTCCTCTGTCTCCCAGAGCAGAGTCAAACCCATTCTCCTCTGAGCGGCCTACTTCCTGGACACGGGATGCACCGCGGCCTCGTCTGTTTGGCCCCCCACGGCCTCTGCTCTCCCTGTCTGcccttctctctctgttctcagtTGTTACCGCATCTTTCCCCACAGTTTTCTTCTTGCCAACTGTCTCCCATGAGTCCTTGGCAGTGACCTCTTCCAACAGGAAGTTGATAGCCCTGTTGACATCCCCATTGCAGTCGTGAAGGGCCACCATGCACTCATCCTGATTTCGGCCTGTGACCTCAATGAGCTGTTGGACCTTCCCTTCAAAGTCTGCATCGTTTTTGTCATAAATCATCTGCGCAAGGCGAATCTGTTCTGCTGTGGCCTGAACCTGTTTCTGTGgctgtgaggtgtgtgtggtctgtggcTGCACTCGGTCCCGATTGCCTCGGGCAGCATCAGCAACCACTGAAGTCATCataaacagtatatacaaaataatgtaTGTACAAAGTAGAAAAGtCTGCACACAGCACTCACACGCTGCCTCACACACACGAGTGGCGGTGAGTAACCATGCAGCAGCAGGAAACACTCGCCTCCTCTCTCa
>TU376996
aaaaaaaaaaaaaaagcaaaaaaaaaaaaacatccttcaaaaaaataaaacggaGCGACCACAACTCATGTTCGGctttttaacatttacagtatatataaatacttacattaatattttacatgaaACACCGAATTGggaggaaagaaaaacaaacaaaagaaataagCAGAGGAAAACTTTGGAGGGGGTGGGGAGGGTAGGGAGagattgtgtgtgagtgtgtaagtgtatgtgtgtgtataatgtgtgtttcAGGCCAGCTGCAGGACTGAAGGTTGAGAATTGGACTGTTCACATAACCTCCAATTTCCGATCAGTTGGCCCAGTAGGGGGAGCTGCTGTAACTGGATTTGCCTTGGCTCTTCTGCATGCTGCTGGACTGATTGCGTGGAccctgcaagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
>TU376999
ttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacatccttcaaaaaaataaaacggaGCGACCACAACTCATGTTCGGctttttaacatttacagtatatataaatacttacattaatattttacatgaaACACCGAATTGggaggaaagaaaaacaaacaaaagaaataagCAGAGGAAAACTTTGGAGGGGGTGGGGAGGGTAGGGAGagattgtgtgtgagtgtgtaagtgtatgtgtgtgtataatgtgtgtttcAGGCCAGCTGCAGGACTGAAGGTTGAGAATTGGACTGTTCACATAACCTCCAATTTCCGATCAGTTGGCCCAGTAGGGGGAGCTGCTGTAACTGGATTTGCCTTGGCTCTTCTGCATGCTGCTGGACTGATTGCGTGGAccCTGTGTGTCCTGGGCCATGTGGTGGTGTAGCAGCTGAGATGGGGGCTGCTGATGGGGAGGCAAGATGTGAAGGAAGGGGGCAGGTGCATAGCCAGGAGCTCCGCCAGGGTTTAGGGGTCCTGTGCCTCCCAATGCAGACGGCAGGCTGAACGTTGCAGGGGTCGCTGCAGGGAAACCCTGCTTATCAAATGACTGGGTCTTGCTGTACACTGCTGCACCAAGATCAGAGCTGGCAGAACCTGATAATCCAGGTGCTTTTCCTGCACTATTGCTGGGCTTGGCCTGTGACTGCGAGCTGCCTCCATATCCTCCTTTCCCATAATCTCCTCCTGCGTGAGCCTGAGCCAGATCATCAAAACCTGAAGCATAGGCGTGCTGACCATAGCTGGCCTGGTGCTGGTACTGGCCAGTTGGCCCCATTGCGTGTTGCTTTGCTGAGGCCTGGGACATGAAGACTGTGGGACCGTACTGGAAGGCACTGGGCACACCTGGCACACCAGCATAGTAGGGCAGGCTTGTGTAACCATAGCCAGGGGGCAGAGGGGGGTTGAGAAAAGCCTGGCCGGGGTTCTGTGGGCCCTGTGTTTGAGGAGGAACCGTGCCTGGCTCTGACTGGGATTGGGCGACTGAAGAAAGGCTGGTCGTGGGTGCCGGAGAGGCTGCTTCACCACGCGTAAACTTGGTGGCTTCACCGAGTAGGGGTTGTTTGCTAGTCCTCCATCTCTGGCAGCAAGGGGGGCAGTGCCAGGGAAGGTGGCCATCCCATAATAATCCATGGGCAGACGGGACTGCATCATCTGTAGGTCTTCATAGCCATAGATCTGGGGGTATGCAGGAAGCAGTCCTCCAGGACCCATGATGTACTGATTAGCCAACAGAGGTGGTACTCCTTGAGCTAGATTGGGTGGAGCTTTACCAGAGGTGGTGTTGGTCTGCATTGGTGCAGAGCGAGCCGTGGAGGGAGCAGAAGGGCCATTGGTGGTAAGCCCAGGAGCGCCTGTGATTAGACCATTGGAGTTGACAACTGAGCTTGCAGAGCTGACTGTTGATCCAGAAGGGAGTGTCAACGGACTTCCGCTGACATCACTGGCCATGCTGAATGCAGTGCTTGTGGGGGCATTAGAGCCTAATGTAGCTCCACTGCTTACATGACTGTTGTGGGATGGCAGAGCGGTGCTTGGAGCAGGGGCTGGTGCAGACGATGGTGGTATGGTTGACGAGGGCATAGTTATAGACACAGACTGAGGAGTGCTTGAAACaaCATCTTGTGTACTGGACGTTCGTACCTCACCGTATCCATTTGTGAGAGGTGCagtggaggaggtggtggtggagtCCTTGCACAGCCTTGAGGGTTCTGTTCTAGTGGATGCTGAGGCAGCAGATGCTGTAGCAGTGGCTAAGCCCAAAGATGGAGAGGGATATCTGGGCTCCATTGCTGTTGTAGGCAGAGCAGGCGGAAGACCACTCAATGGCTcaCTAACAGTGCTGGGTTTGGAGTACAAGCTGCTCTGCGTTGGTTGAGCAGTAGGTGCCATTTCCTGACTGCTTGCTTCTGACTGGCTGGGGCTCTCCACAGCAGACTCTGAGGCAAAATCCAGGGCACCAAACTGCACATTCAACCCAGACACATCAGCAGAGCCTGGCATCTCCACTGCCGAAGACGGAATCTTAGACGGAGGGGGCAGCCTGCGCCTCTGTGGCCTGATGTGTTTGGGCTGAGAGGCTTCAGCTATTGTGGGGGCGCTGGTCTCCACCAGGGTTTTCAGCACAGGGGATGGGTTGTTGTGAGGGGGCAGGGGGGGAGATGGATCTCGTCCCTGAGCCGGCAGGTCCGATTGGAGGATAGGGTTGTGGTGCTGGGTGAGTTGACTGAGAATAGGGGAGGGGTCGGGCTGGGCCTTCAAATCCAAGTGGCTCAGTGTAACAGGGATCTCCGCCTTGGGTTCACTCAAAGCCAAGGGTGCAGGTGCAGGTGGGCTGGGAACGCTGGATTCTGCAGCTGAGCTGCCATTGGTCAGGGCAACTGTTATCTGACTGGACAGAGGAGCAAGTCGGGGGGTACTGATTGGATCAGCTTTCTGTACATCAGGTTGGGGCACTCTGGAGCCTAAAGACGATGCAGCGTGAGCAAAAgtgccagcagcagcagcggcataGCTGTTGGCAGCGGCCGAGgcgtagctgtgtgtgtgtgttcggccTGTGTGCTGTTGAGAGTTGGTGAACACCAGGCTCTGCATGAGCGGCTCGGGAGACGCTGGCTCCAATCCAGCCAGCTCTGAATCCACCTCTGTTGCTTTAGGCAACAGAGAATTCAGATCCACCCCCTGGCTAGTTGCTGTGTGGTTCTCCGATGCAAGTACAAAGGAGGCAGTGAACACTTTGGTCTCAGAAAGATCTTCATTCCAGTCTTCTGCAGCCCATTCTTCCAGATTACTTCTCCAGGTTCCTGCAGCATCAGTAGTGTCATTGACTGCCTCTCCTGATTCAGCAGGGCCAGTGTAATCAGCAGGATTAAACGTCCCCATTCCCTGAGAGAATCTACTCACACCAGTTCCTCTGCCTCTCCCTCTGCCTCCTGCACCTCTGCCTCTTCCTCTACGTCCACGCTCTCCTCCTCTGTCTCCCAGAGCAGAGTCAAACCCATTCTCCTCTGAGCGGCCTACTTCCTGGACACGGGATGCACCGCGGCCTCGTCTGTTTGGCCCCCCACGGCCTCTGCTCTCCCTGTCTGcccttctctctctgttctcagtTGTTACCGCATCTTTCCCCACAGTTTTCTTCTTGCCAACTGTCTCCCATGAGTCCTTGGCAGTGACCTCTTCCAACAGGAAGTTGATAGCCCTGTTGACATCCCCATTGCAGTCGTGAAGGGCCACCATGCACTCATCCTGATTTCGGCCTGTGACCTCAATGAGCTGTTGGACCTTCCCTTCAAAGTCTGCATCGTTTTTGTCATAAATCATCTGCGCAAGGCGAATCTGTTCTGCTGTGGCCTGAACCTGTTTCTGTGgctgtgaggtgtgtgtggtctgtggcTGCACTCGGTCCCGATTGCCTCGGGCAGCATCAGCAACCACTGAAGTCATCataaacagtatatacaaaataatgtaTGTACAAAGTAGAAAAGtCTGCACACAGCACTCACACGCTGCCTCACACACACGAGTGGCGGTGAGTAACCATGCAGCAGCAGGAAACACTCGCCTCCTCTCTCa

Function

NR:

description
PREDICTED: ubiquitin-associated protein 2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU376991 False 1458 lncRNA 0.50 6 503187 506843
TU376993 True 3905 lncRNA 0.53 27 503187 519326
TU376996 False 438 lncRNA 0.37 2 480129 503904
TU376999 False 3628 lncRNA 0.54 28 503044 519326

Neighbor

gene id symbol gene type direction distance location
LOC103029345 NA coding upstream 229519 249084 ~ 250610 (+)
nkx6-3 nkx6-3,nkx6.3,LOC107726306,LOC107548267,LOC107683904,LOC107702846 coding upstream 363468 111254 ~ 116661 (+)
adamts13 adamts13 coding downstream 1953 521279 ~ 569495 (+)
ddx51 NA coding downstream 71027 590353 ~ 605255 (+)
golm1 NA coding downstream 96864 616190 ~ 635257 (+)
G274963 NA non-coding upstream 46935 432843 ~ 433194 (+)
G274956 NA non-coding upstream 60786 417811 ~ 419343 (+)
G274955 NA non-coding upstream 62472 416484 ~ 417657 (+)
G274954 NA non-coding upstream 63988 415832 ~ 416141 (+)
G274952 NA non-coding upstream 65166 412402 ~ 414963 (+)
rfk rfk,LOC107723557 other upstream 85940 384455 ~ 394189 (+)
G274945 NA other upstream 100955 378794 ~ 379174 (+)
LOC111189882 NA other upstream 371760 104420 ~ 108369 (+)

Expression


Co-expression Network