G77538


Basic Information

Item Value
gene id G77538
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 358501 ~ 359239 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU88416
GCTTACCCTAACGGCGTTGCATAACCTCTTTCTCTAACTTCCCAGCACCACAAATCAAAATTAGCCGAAACAGTCTCATAATTCTCGAAGAAAACTGCACAACCTGTATTGCTTCTGTGTTATTCCCCTGGACCTTCACTGCATGAACTTTGTTTACTTTTTGGGCTTGGACTACTGTGTTTGCACAGACGCACGGAGTTGCAGAGAACCGGAACATCTGCAGTTGAACTGAAACTGACTGTCTGCGGCTGTATCCTCCATTAAAGTGGGGGTTGTTTACACAGACTTTGGCTTCCCTGCGGACATGTTGTTAAGTTGTTTAAGAAAACAATATTTGCATTAAAAGCATAAAGTACAGTGAGTACAATACTAATGTGTAAGGAAATACTCTCTGTTGTGAAGATGAGCTTAAACCTTTAAAATGACCCTACTGAAAAACCTTTTAAACCACGCTATAGGCTGGTTTGCTGGACAGGGCTGGCTGGTTTTAGAGTAGTGGTTCTCAACCTTTTTGACCCCTATAGAATCTTTTCACATTTCTGGGGGTCTCAGAAGTGGAAGTCGTTGTGGTCGGATAAACTTAGTGGTGAATGAGAGACGACAGCAAATATAATTTTTGTATTCCCATTTTTGAAATTTGCCATCACTCCATTAACCATTGCATTATTAACACCCTCACAACAGCGTTATTTTTGTTTCTGTTTTTTTTTAGATTTAACTGTATAAAAAGTAATATAAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU88416 True 739 lncRNA 0.40 1 358501 359239

Neighbor

gene id symbol gene type direction distance location
CI01000013_00259782_00293697 MAP3K10 coding upstream 64804 259782 ~ 293697 (+)
CI01000013_00151644_00152374 SIX9 coding upstream 205405 151135 ~ 153096 (+)
CI01000013_00142867_00148461 SIX5 coding upstream 209493 142867 ~ 149008 (+)
CI01000013_00082083_00124049 YAP1 coding upstream 234452 82083 ~ 124049 (+)
CI01000013_00055395_00073103 NA coding upstream 285069 54114 ~ 73432 (+)
CI01000013_00432775_00439564 RCN2 coding downstream 73536 432775 ~ 439579 (+)
CI01000013_00441663_00456168 PSTPIP1A coding downstream 82424 441663 ~ 456456 (+)
CI01000013_00473761_00488628 NA coding downstream 113899 473138 ~ 488832 (+)
CI01000013_00490680_00491519 CH25HL1.1 coding downstream 131377 490616 ~ 491630 (+)
CI01000013_00526975_00537006 SLC28A1 coding downstream 167736 526975 ~ 537074 (+)
G77534 NA non-coding upstream 58105 293158 ~ 300396 (+)
G77507 NA non-coding upstream 193392 162295 ~ 165109 (+)
G77562 NA non-coding upstream 196698 161583 ~ 161803 (+)
G77505 NA non-coding upstream 222848 134702 ~ 135653 (+)
G77541 NA non-coding upstream 244064 89806 ~ 114437 (+)
G77635 NA non-coding downstream 12332 371571 ~ 371944 (+)
G77636 NA non-coding downstream 12814 372053 ~ 372408 (+)
G77510 NA non-coding downstream 41378 400617 ~ 401655 (+)
G77519 NA non-coding downstream 97642 456881 ~ 457113 (+)
G77502 NA non-coding downstream 98086 457325 ~ 457873 (+)
G77533 NA other downstream 349594 708833 ~ 709549 (+)
G77695 NA other downstream 587282 946521 ~ 952969 (+)
G79309 NA other downstream 2107526 2466765 ~ 2467171 (+)
G80062 NA other downstream 3224769 3584008 ~ 3584784 (+)
CI01000013_04051081_04064651 NA other downstream 3705694 4050837 ~ 4065829 (+)

Expression


Co-expression Network