G77502


Basic Information

Item Value
gene id G77502
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 457325 ~ 457873 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU88380
ATCTTAATTTGTGCTCCGAAGATGAACGAAGGTCTTACGGGTGTGGAATGACACGAGGGTAATTAATGCCAGAATTTTCATTTTTGGGTGAACTAATCCTTAAATCAGTGGTACAAAAGTGAGGTCATATACAGTTTTAACTATTATACACATTTAGGAAAAAAAATGTTCAATGGGGTTCAATATAGAACCCTAGGGTTTTTGACTCCGTTTTAAAAGAACCCTTTATTTTTGCCGTTTTTTTTTTTTTTTTACTTTATTTAGACAGTACAGCTAGTGAGAAGATGGGAAACAAAGTGGGAGAGAAAGAAGGGGTTGGGATCGGGAAAGGACCATGAGCTGGAACTCAAACTCGGGTCACTCGAAGCTCCATAAAATGATCCAATGATGAATCACTCCTAAAGGTTCTATATGATGCACATGACAGAACCCTTGAAGGTTCTATATGGAACTTTTATTCTAAGAGTGTCTCATCCATAATAGAGCTCCAACTTCATCATTTTGCATTTATCAGCTGGATGGCATAAAATGAACAATAAAGCTGTGTAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU88380 True 549 lncRNA 0.37 1 457325 457873

Neighbor

gene id symbol gene type direction distance location
CI01000013_00441663_00456168 PSTPIP1A coding upstream 869 441663 ~ 456456 (+)
CI01000013_00432775_00439564 RCN2 coding upstream 17746 432775 ~ 439579 (+)
CI01000013_00259782_00293697 MAP3K10 coding upstream 163628 259782 ~ 293697 (+)
CI01000013_00151644_00152374 SIX9 coding upstream 304229 151135 ~ 153096 (+)
CI01000013_00142867_00148461 SIX5 coding upstream 308317 142867 ~ 149008 (+)
CI01000013_00473761_00488628 NA coding downstream 15265 473138 ~ 488832 (+)
CI01000013_00490680_00491519 CH25HL1.1 coding downstream 32743 490616 ~ 491630 (+)
CI01000013_00526975_00537006 SLC28A1 coding downstream 69102 526975 ~ 537074 (+)
CI01000013_00561825_00581324 NA coding downstream 102977 560823 ~ 581576 (+)
CI01000013_00657437_00692874 FRMD5 coding downstream 199564 657437 ~ 692874 (+)
G77519 NA non-coding upstream 212 456881 ~ 457113 (+)
G77510 NA non-coding upstream 55670 400617 ~ 401655 (+)
G77636 NA non-coding upstream 84917 372053 ~ 372408 (+)
G77635 NA non-coding upstream 85381 371571 ~ 371944 (+)
G77538 NA non-coding upstream 98086 358501 ~ 359239 (+)
G77540 NA non-coding downstream 50679 508552 ~ 511252 (+)
G77518 NA non-coding downstream 54278 512151 ~ 512902 (+)
G77530 NA non-coding downstream 159044 616917 ~ 634839 (+)
G77509 NA non-coding downstream 240166 698039 ~ 702077 (+)
G77533 NA other downstream 250960 708833 ~ 709549 (+)
G77695 NA other downstream 488648 946521 ~ 952969 (+)
G79309 NA other downstream 2008892 2466765 ~ 2467171 (+)
G80062 NA other downstream 3126135 3584008 ~ 3584784 (+)
CI01000013_04051081_04064651 NA other downstream 3607060 4050837 ~ 4065829 (+)

Expression


Co-expression Network