G77540


Basic Information

Item Value
gene id G77540
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 508552 ~ 511252 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU88418
CAAAGGATTAGGACTCGAATTGATACAGTAAAACCGACACCATCGTTACTGGAAGAAATTCAGATATGTTAAAGAGACATGCACTCTAAGCGGATAGACCAATCACGACAGACTGGGCCATCGGACCAATCAGGGCAGAGTAGTCTCTCAGAAAGGAGGGGTCTAGAGAGAACGAATCCTTTATCGAACAGTTTCAGACACCGTGAGAAAAGAGGCGATGTTGCAATGTATATTATGAGCAAATTAAAGTGTTTTTTGATCTTAGATGCATGTAAACTTGTAGGAGACCTCCAAAACAAAATTAGGAAGCTTTAAAATACCATAATAGGGGCACTTTAAACTTGATTCATTACATATTACATGGCATACCTTAAATTTGGGGTAGTCATTCATCAAAATTGTGACAATTCCGATGTAAGGCACAAACCTGTCATAGAGGAAGAGTGATCAGTAATGTGTTAATGTACACAAAGCAATGCAAGACATGGAATAAACTGAAACTTACAATACTGGATCAGATTTGTTTGTGCAAAGATGTCTAAGAATTCTACTACCACAGTATATTATTATTATTGTACCAAGCATCAAGATCTTACCCTCTTGCTCTGCCCACCACGTCTTTCTTCTCCAACCAGTGCTGTCCCTGCTTGTAAAGACCTCGGTCATCCACAGAATTATTGTCACCTTTCGTCAAGAACTTGATATCACCATTTTCTTTTTCATGAATTTTTAGGACTCTGTGTACAATGGGAATTTCTCTTCCTTCGATCCTGAACACAACAATCTCTCCCACTCTGATTGGATCTTCAACACGATTTGTGAGGAAGAGGAGGTCTCCTCTGTGAAATGCAGGCTCCATGCTTCCACTGAGAACAACCACAATCGGGCTCTCGCTTCCAGTTACAACCATCAAGCCTTTCCAGATCATCAAGGCTGAAGATACAATCATTCCAAAATTCAGCACCTGATAGTAAAGCTGACGCTTATTCATTCGCCGCACATCATCGAGGAAATCTAATGATATCATCTTGCCTGTAGATTAAATATGTATGGCAAAAGTCAATCAAAAACAATTGCAAAATTATGATTTTGGTGCAAATGTTTCGCCGCCACTGCTGTAGTTAGCGGATACGCGGCGAATCTTCTGGTTGCGTTACTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU88418 True 1159 lncRNA 0.40 4 508552 511252

Neighbor

gene id symbol gene type direction distance location
CI01000013_00490680_00491519 CH25HL1.1 coding upstream 16922 490616 ~ 491630 (+)
CI01000013_00473761_00488628 NA coding upstream 19720 473138 ~ 488832 (+)
CI01000013_00441663_00456168 PSTPIP1A coding upstream 52096 441663 ~ 456456 (+)
CI01000013_00432775_00439564 RCN2 coding upstream 68973 432775 ~ 439579 (+)
CI01000013_00259782_00293697 MAP3K10 coding upstream 214855 259782 ~ 293697 (+)
CI01000013_00526975_00537006 SLC28A1 coding downstream 15723 526975 ~ 537074 (+)
CI01000013_00561825_00581324 NA coding downstream 49598 560823 ~ 581576 (+)
CI01000013_00657437_00692874 FRMD5 coding downstream 146185 657437 ~ 692874 (+)
CI01000013_00849127_00850710 ANKRD34C coding downstream 337338 848590 ~ 850969 (+)
CI01000013_00862608_00869073 IDH2, IDHP, IDH2.S coding downstream 351166 862418 ~ 869073 (+)
G77502 NA non-coding upstream 50679 457325 ~ 457873 (+)
G77519 NA non-coding upstream 51439 456881 ~ 457113 (+)
G77510 NA non-coding upstream 106897 400617 ~ 401655 (+)
G77636 NA non-coding upstream 136144 372053 ~ 372408 (+)
G77635 NA non-coding upstream 136608 371571 ~ 371944 (+)
G77518 NA non-coding downstream 899 512151 ~ 512902 (+)
G77530 NA non-coding downstream 105665 616917 ~ 634839 (+)
G77509 NA non-coding downstream 186787 698039 ~ 702077 (+)
G77528 NA non-coding downstream 195291 706543 ~ 707255 (+)
G77533 NA other downstream 197581 708833 ~ 709549 (+)
G77695 NA other downstream 435269 946521 ~ 952969 (+)
G79309 NA other downstream 1955513 2466765 ~ 2467171 (+)
G80062 NA other downstream 3072756 3584008 ~ 3584784 (+)
CI01000013_04051081_04064651 NA other downstream 3553681 4050837 ~ 4065829 (+)

Expression


Co-expression Network