Gene
RNA
| Item | Value |
|---|---|
| gene id | G77739 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000013 |
| NCBI id | null |
| chromosome length | 12551977 |
| location | 897750 ~ 897950 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU88626 | True | 201 | lncRNA | 0.31 | 1 | 897750 | 897950 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000013_00870861_00871425 | IDH2 | coding | upstream | 26228 | 870861 ~ 871522 (+) |
| CI01000013_00862608_00869073 | IDH2, IDHP, IDH2.S | coding | upstream | 28677 | 862418 ~ 869073 (+) |
| CI01000013_00849127_00850710 | ANKRD34C | coding | upstream | 46781 | 848590 ~ 850969 (+) |
| CI01000013_00657437_00692874 | FRMD5 | coding | upstream | 204876 | 657437 ~ 692874 (+) |
| CI01000013_00561825_00581324 | NA | coding | upstream | 316174 | 560823 ~ 581576 (+) |
| CI01000013_01007844_01029438 | SEMA4B, SEMA4BA | coding | downstream | 109894 | 1007844 ~ 1029459 (+) |
| CI01000013_01036536_01049545 | NA | coding | downstream | 138586 | 1036536 ~ 1049882 (+) |
| CI01000013_01115756_01164524 | NA | coding | downstream | 217806 | 1115756 ~ 1166617 (+) |
| CI01000013_01220794_01229752 | GNRHR4 | coding | downstream | 322844 | 1220794 ~ 1230958 (+) |
| CI01000013_01275415_01295230 | PLIN1 | coding | downstream | 377172 | 1275122 ~ 1295324 (+) |
| G77736 | NA | non-coding | upstream | 4809 | 892664 ~ 892941 (+) |
| G77729 | NA | non-coding | upstream | 44220 | 851430 ~ 853530 (+) |
| G77725 | NA | non-coding | upstream | 59706 | 837697 ~ 838044 (+) |
| G77724 | NA | non-coding | upstream | 60189 | 837329 ~ 837561 (+) |
| G77712 | NA | non-coding | upstream | 113294 | 783781 ~ 784456 (+) |
| G77747 | NA | non-coding | downstream | 10647 | 908597 ~ 908910 (+) |
| G77765 | NA | non-coding | downstream | 39299 | 937249 ~ 937457 (+) |
| G77800 | NA | non-coding | downstream | 175552 | 1073502 ~ 1073829 (+) |
| G77826 | NA | non-coding | downstream | 283252 | 1181202 ~ 1181428 (+) |
| G77533 | NA | other | upstream | 188201 | 708833 ~ 709549 (+) |
| G77695 | NA | other | downstream | 48571 | 946521 ~ 952969 (+) |
| G79309 | NA | other | downstream | 1568815 | 2466765 ~ 2467171 (+) |
| G80062 | NA | other | downstream | 2686058 | 3584008 ~ 3584784 (+) |
| CI01000013_04051081_04064651 | NA | other | downstream | 3166983 | 4050837 ~ 4065829 (+) |
| G80845 | NA | other | downstream | 3937128 | 4835078 ~ 4836232 (+) |
