Gene
RNA
| Item | Value |
|---|---|
| gene id | G77829 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000013 |
| NCBI id | null |
| chromosome length | 12551977 |
| location | 1186909 ~ 1187191 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU88719 | True | 283 | lncRNA | 0.49 | 1 | 1186909 | 1187191 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000013_01115756_01164524 | NA | coding | upstream | 22385 | 1115756 ~ 1166617 (+) |
| CI01000013_01036536_01049545 | NA | coding | upstream | 137027 | 1036536 ~ 1049882 (+) |
| CI01000013_01007844_01029438 | SEMA4B, SEMA4BA | coding | upstream | 157450 | 1007844 ~ 1029459 (+) |
| CI01000013_00870861_00871425 | IDH2 | coding | upstream | 315387 | 870861 ~ 871522 (+) |
| CI01000013_00862608_00869073 | IDH2, IDHP, IDH2.S | coding | upstream | 317836 | 862418 ~ 869073 (+) |
| CI01000013_01220794_01229752 | GNRHR4 | coding | downstream | 33603 | 1220794 ~ 1230958 (+) |
| CI01000013_01275415_01295230 | PLIN1 | coding | downstream | 87931 | 1275122 ~ 1295324 (+) |
| CI01000013_01335438_01381270 | SLCO3A1 | coding | downstream | 148247 | 1335438 ~ 1381270 (+) |
| CI01000013_01405290_01429838 | NA | coding | downstream | 218099 | 1405290 ~ 1430313 (+) |
| CI01000013_01443540_01469011 | CHD2 | coding | downstream | 256349 | 1443540 ~ 1469076 (+) |
| G77826 | NA | non-coding | upstream | 5481 | 1181202 ~ 1181428 (+) |
| G77800 | NA | non-coding | upstream | 113080 | 1073502 ~ 1073829 (+) |
| G77765 | NA | non-coding | upstream | 249452 | 937249 ~ 937457 (+) |
| G77747 | NA | non-coding | upstream | 277999 | 908597 ~ 908910 (+) |
| G77894 | NA | non-coding | downstream | 130060 | 1317251 ~ 1317663 (+) |
| G77895 | NA | non-coding | downstream | 130530 | 1317721 ~ 1317963 (+) |
| G77875 | NA | non-coding | downstream | 283629 | 1470820 ~ 1471360 (+) |
| G77918 | NA | non-coding | downstream | 297283 | 1484474 ~ 1484721 (+) |
| G77695 | NA | other | upstream | 233940 | 946521 ~ 952969 (+) |
| G77533 | NA | other | upstream | 477360 | 708833 ~ 709549 (+) |
| G79309 | NA | other | downstream | 1279574 | 2466765 ~ 2467171 (+) |
| G80062 | NA | other | downstream | 2396817 | 3584008 ~ 3584784 (+) |
| CI01000013_04051081_04064651 | NA | other | downstream | 2877742 | 4050837 ~ 4065829 (+) |
| G80845 | NA | other | downstream | 3647887 | 4835078 ~ 4836232 (+) |
| CI01000013_06050285_06059640 | NA | other | downstream | 4869107 | 6049864 ~ 6060269 (+) |
