trnaa-ugc_22


Basic Information

Item Value
gene id trnaa-ugc_22
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172608.1
NCBI id APWO02002206.1
chromosome length 232625
location 221592 ~ 221663 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>trnaa-ugc_22
GGGGATGTAGCTCAGTGGTAGAGCGCATGCTTTGCATGTATGAGGTCCTGGGTTCAATCCCCAGCATCTCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnaa-ugc_22 True 72 tRNA 0.54 1 221592 221663

Neighbor

gene id symbol gene type direction distance location
trnaa-ugc_21 NA coding downstream 403 221118 ~ 221189 (-)
trnaa-ugc_20 NA coding downstream 1161 220360 ~ 220431 (-)
trnaa-ugc_19 NA coding downstream 6502 215019 ~ 215090 (-)
trnaa-ugc_18 NA coding downstream 7258 214263 ~ 214334 (-)
trnaa-ugc_17 NA coding downstream 7938 213583 ~ 213654 (-)
trnaa-ugc_23 NA coding upstream 687 222350 ~ 222421 (-)
trnaa-ugc_24 NA coding upstream 1442 223105 ~ 223176 (-)
trnaa-ugc_25 NA coding upstream 2197 223860 ~ 223931 (-)
trnaa-ugc_26 NA coding upstream 2955 224618 ~ 224689 (-)
trnaa-ugc_27 NA coding upstream 3713 225376 ~ 225447 (-)
G285078 NA non-coding downstream 4582 202387 ~ 217010 (-)
G285076 NA non-coding downstream 35082 186196 ~ 186510 (-)
G285055 NA non-coding downstream 87000 131864 ~ 134592 (-)
LOC111190482 NA non-coding downstream 89487 131139 ~ 132105 (-)
G285044 NA non-coding downstream 153694 64881 ~ 67898 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) trnaa-ugc-311 NA coding NW_023494159.1 JAAXML020000487.1 25609 ~ 25680 (-)
eurasian perch (Perca fluviatilis) trnan-guu_26 NA coding NC_053133.1 CM020930.1 1633175 ~ 1633248 (+)
striped catfish (Pangasianodon hypophthalmus) trnaa-ugc_7 NA coding NC_047606.1 CM018552.1 9107686 ~ 9107757 (+)
tiger barb (Puntius tetrazona) trnaa-ugc_115 NA coding NC_056704.1 CM032073.1 13467494 ~ 13467565 (-)
mexican tetra (Astyanax mexicanus) trnaa-ugc_7 NA coding NW_019172608.1 APWO02002206.1 196298 ~ 196369 (-)