G79358


Basic Information

Item Value
gene id G79358
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 2595938 ~ 2598371 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU90379
CTTAAAGCCACCATGAAATAAAATGTAACTTTTCTTGTTTTTTATGGAATATTGCAGTATTTATTATAAACTATTTATCCATGCACATCATTATTTTTTAAATCTTTAATCAGAATAGCTTCCCGTCTCACTTGCAGCGACATCTGTTTTCTTCTCTGACATGTTTATATGAAGGCGGGACAACCTGTCAATCCAATCAACAATCTAACAATCCAATCAATTCCCGATGGACAAAATCAAGCCCCGCCCTAATTTTCTTCTTGTTCGAGAAGTCGCTTCACGAGGATATATATCACGGTAGGGAAGAAAAGACTATCGACTAACTTCCGTTTTGTGCCGATTTTACATAAAAGCAAAAGTACTGTCCCTTCTGCATATTTTTCATCTTTTAGAAATGTTTACTTTTAGAAATAGTTCCAGGTTATCAGGTGTTTCACACCACATCATTTGCATATAAGCTTTATTTGACAACATATCACTATGAACATCTAAAGGGGTTTTACCTTTAAGTTCTATTTATAAAGATATGCGTCATCGTGAATTTGATCCCACTCAAATAGGAATGTCTGTCATTTGCGGTATATTATTATTATAATTTTACATTTTTCCTCATCAATTCTCATAATGATTACTTCCAGATTACAAAGAGCCCCTAAATTGAGTACGATGCAATATATGAAATAACAGACAGTCTGTGTTAGTAACCGTAACTCAAATGTTGTTTCCAAAAATAATTTAAATACTGCTATAGTCTTATTTTTCTAATTTGAATACAGGTATATAAACCTGTTGTTTTTTTTTCCAGGTCAGCCTTACATAAAGATTATTAGCTGATGATGAGGCTGTTCAGATGGGTTTTCTCTGGATAATGAGTGGGAGCGTGAGCACCGCTGGGGCGTTGCCGGGGACTGCAGGGAATATTCTGGTGCCAGCACCCTCTCTTCTTTATTCCCCAACTGTTTTCCCTCTATGACACACACACAAGCCCACAGACTCATACTTGCACAATAAACAACCACATGCCCCAGTGACGGTTTGCGTAGAGAGCAATGAACGATAATGTTTAAACTGATAATCACTATTACTTGCTCAAAAAATGAGTATCACGATTATTAATCAGAACTGTTCTCATTTGAGAAATTTCTTTTTACATTTCATCACATTACTGCACATTCACGAAAGCACAAATCAAGAGAACGTCAACTTATATGCAGTGTTTATCTTCCTGATTTATTACATTTATCATATACATTAACACACTTTCTACATTATGAAAACTAGTTAAACTTTAAAAAGCTTCTCTCAAAAGCTGAAATAGTGATTTTCTATTAAAACAACAAAAATACTTTGTAGTACAGCACAGAGGTTGAAACCCCAAACGTAAACAATATAGTCGAAATTAGGGTTGTCAAAAAAGCCGTTGAACATTGTAGCCAATCACAGACATATCTGTTGAGCGCGTGAACACAATGGCCAATCAGAGGTGTTTAAGAATCCACTCATCAGTGCTCAAAATGCTAGGGGGAAATGCTGGTATCATCACATTTTTAAAACTTCAGTAACGACTTGGTACCGAAGTCAGAACTTTTGTCAACTCTAGTCGAGATTCATGTTTGGAATTACTGTTTGTCACTTAGAATGCTCACAGATTTATACTCAGTGCAGTAAATAATACAAACGGCCTCAAAGAAGAATACAGACTGGCTGTATTAAACATTCATTTCAGCAGAATATTTCAATAGAGATCGCTAAACTCCAACATACATATTTGTCTATGATAATCAACGTTTTTGTTGCAGTGCAGAGAGAGCACATGTGCATGTTCGCCAGGTTGGGAAGATAGGTAACACACTAGGCGGAAAATGCACCCATTTAAATGAAGTAAAAAGTTATAATTGGAGGATTTAAGCTCATGACATCTGGCGAAACAAAGCATGAAAGCTTGTGGAGGCTTGTTACCAATGCAAGATAATAGAAATGTCAAATGTAAAAAAGAAATGTTTTCAAAATAAATAACCAGCAGGCCAATTATGCTTAATTAATCAAGAGATGCAGAAATCGTGATCATGATTAAAATACAATAAATCGTGCAGCCCTGCTCAAATTAAACACAAAGAATGCCTCAAGTCATGCACTACTGCAAAAAGCCACCTATGAGATTTCCATTAAGTTTAAAGGAAAAACAAAGCATCACTAATGTGTCTCAATACTTTAAAATCCACTATTTGTCGACATATCCCCAGTGGTCACAGACAGCAATTCATATGAGTGACTGCCCGCATCCAATCAGTTTTGCCTGAAAGAACAGATTTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU90379 True 2314 lncRNA 0.36 2 2595938 2598371

Neighbor

gene id symbol gene type direction distance location
CI01000013_02528016_02529126 NA coding upstream 66692 2527448 ~ 2529246 (+)
CI01000013_02510121_02510417 NA coding upstream 85404 2510083 ~ 2513164 (+)
CI01000013_02411870_02429950 NA coding upstream 165981 2410427 ~ 2429957 (+)
CI01000013_02409027_02409452 NA coding upstream 186331 2407306 ~ 2409607 (+)
CI01000013_02386700_02394730 NA coding upstream 200642 2386348 ~ 2395296 (+)
CI01000013_02656037_02664145 HSF4 coding downstream 57666 2656037 ~ 2664398 (+)
CI01000013_02666598_02669821 NUDT21, CPSF5, NUDT21.L coding downstream 68227 2666598 ~ 2669821 (+)
CI01000013_02685665_02686639 NA coding downstream 84096 2682467 ~ 2686835 (+)
CI01000013_02692887_02696848 NA coding downstream 94072 2692443 ~ 2697020 (+)
CI01000013_02709871_02711692 NA coding downstream 111082 2709453 ~ 2712499 (+)
G79344 NA non-coding upstream 22415 2572701 ~ 2573523 (+)
G79332 NA non-coding upstream 69008 2526106 ~ 2526930 (+)
G79310 NA non-coding upstream 126825 2468883 ~ 2469113 (+)
G79303 NA non-coding upstream 138337 2457388 ~ 2457601 (+)
G79402 NA non-coding downstream 96341 2694712 ~ 2695125 (+)
G79397 NA non-coding downstream 135733 2734104 ~ 2748629 (+)
G79440 NA non-coding downstream 169082 2767453 ~ 2767739 (+)
G79441 NA non-coding downstream 170106 2768477 ~ 2769076 (+)
G79442 NA non-coding downstream 171106 2769477 ~ 2769829 (+)
G79309 NA other upstream 128767 2466765 ~ 2467171 (+)
G77695 NA other upstream 1642969 946521 ~ 952969 (+)
G77533 NA other upstream 1886389 708833 ~ 709549 (+)
G80062 NA other downstream 985637 3584008 ~ 3584784 (+)
CI01000013_04051081_04064651 NA other downstream 1466562 4050837 ~ 4065829 (+)
G80845 NA other downstream 2236707 4835078 ~ 4836232 (+)
CI01000013_06050285_06059640 NA other downstream 3457927 6049864 ~ 6060269 (+)
CI01000013_06076169_06080164 NA other downstream 3480191 6075400 ~ 6081684 (+)

Expression


Co-expression Network