slc6a5 (slc6a5,LOC107746429,LOC107662346,LOC107709980,LOC107603121,LOC107675593)


Basic Information

Item Value
gene id slc6a5
gene name slc6a5,LOC107746429,LOC107662346,LOC107709980,LOC107603121,LOC107675593
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172643.1
NCBI id APWO02002241.1
chromosome length 143949
location 28779 ~ 74634 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU393141
ccaccctGTAGGTCTGCAGCGGTTTTGTGAGGACATTGAAATGATGATTGGTTTTCAGCCAAACAAGTTCTGGAGGATATGCTGGGCCTTTGTCACTCCTACCATCCTCACATTTATCCTGGCACTGAGTCTGTACCAGTGGCAGGTTATGACCTATGAGGATTACACCTATCCCACCTGGTCGATGGTAATGGGTTGGTTAATGGTCATCTGCTCCGTCATCTGGATCCCCATCATGTTTGTTATCAAAATGTACCTGGCGCCAGGAACTCTGATTGAGCGCCTGAAGCTGGTTTGCTCACCACAGCCTGACTGGGGCCCATTCCTGATGAAGCATCGCGGAGAACGCTACAAGAACATGATGGACCCGCTGGGCACAAACTCACTGGGACTCAAACTACCACCCAAAGAGTTCCATCTTTCCGCCCAGTACCAGTAACCCCACACTAATGAAAAAACAGGTTACATGCCATAACATAATAAATGCTGATGCTGCTTACAATGAATGAACAAAACATCGTCTTTAGAGAAATGATATTGAGCTGACTGGTGGCCTCACACTTCCATTCCtttttagcagcattagcatattAGCTTTATGTGCAGGGTTTAAGACCTTAAATAAAAGGGTAAACTCTCCagtgcaaacaaaacaaaatcgcACTGCAGCTAAAAGAGTGCAGGCTTTGCTATTAAGCATTATCATAAACTCCAACATCTCCCAATGTAGCAGGAAACATTGTTTTTCCTCATTACTTTCCCCATACTTCCaacctttttttcctctctttgtggtgttattgttttttttcgaGTGGAAAAAACCTCCATCAGTCAGAGGGTGGAGGTCAAATGAGCCACAAGTCTGGACATTTCTTTATAGCTGCAGTATGTGGACATCATGGCAATATCATGAATATGAATTggttaatttgtattatttactatttaactGATGGCACTATTGCTAATGTATGTAGAAGAGCACTAGTCATTTCTGCCTTCGTAATGACCATAAAGTGAGAGAAAACTGCCTTGCAGCTAATCTCTGATTTGCATCCTAAATTTTAGTTGACCTGTCCGGGCTCCACCCACTAATGTGCCTTTGGTAGAAAAACGATTGTGAGATTGGACAACAGTGTTGATGAGAGACTGTCGCTCCACCAGTTGAATGAGTTTGTCATCAGTATCTTTTGAATTTGTTAACATTAGTGTGCTGAACCTGGAGGGGTCACTGTTTGCTCTTTACCTGTATCTCCTAACAGTATATCCTGCACTCTGTGCCTCTGATTCAGTGTAGTATTGTGTAGTATAGCGCTAACCTAAACCTTTATATTCCTGCTGTACAGGAAGCGCATATCTCTCTGTAATCTAGGAGCTGTTCTACGTGAAAGAGCTTCACTTTCAACTCAATGACATAATCTCATTGATAACCCACTTAGTTTAGAAGCACAAGCTTCAGGATATAGGACGGTAGAGTAGATCCATTTCTCTCCTTTTTGATTAAAGGGCATAAAAATGAAGCCATGGAAAAGTTTAAATGTTACCTTTATGTCTTTAAGATGCTACTCTGCAACCAGCTTGTGTAAAAAACTTGCGTAAAGAACTAAGAGTGCTAAGAGCTTTCCACTATGTGTTGTGATCCTTTTAAATGGTTCCCTTAACTGTTTTTCTTGTGTGCAGACTACAGTAGGGCACAATGGTGgaaagtatataaaatatctaTGTGTATTTGTATACCGAGAGACgtgtgtgtagaatgtgtgtCTTGTTCACTGTGAGGCTGTTCCATTAGttctgtaatcatttacagaGAACCTGTGAGTAGTTTATTAGTGTTGTTCACTCCATACAATGTCTTAATCCGTCTCTGTAGCTTTGTAGGttagagaagaaaaaacaacTTTCTCCATGAGTTTAATGATGTAAAAGATGTCCAAGGACCATTCCTCTTCTGAAAAGTTATGTCTCGTCTCTTCTCGTTGGTGTCAATCTCATCATGAAACAGGGTCTCAGGTATACTCCTTATTTTCACAGATGTGAAGCGGCTTTAGGGAATCTTggaattgcttttttaaatgtctgtgCTTCAAAGGAGAAACAGCAAGGAAAAGGAAAACATCTCAGAGATTTTTCTCAATGTGACATAACTCTGCTGTCCACTATAATCTTCTCATATGTGAACGGCTGCCGGTTTGGAGGCACTGTGACAGCACTTCCCCTGCTgttccttcttttcttttagGAATACAAACCATATAACTACAAAAGAAGGCTTATAACTGTAAACAGCCTCCTTTAAGTATTCATTAgataaatttgtttaaaattcaGATTTCAGTCCGAGTGTAACCAGTCACATGAAACAGTCAGGTGCAACCAGGGTCTCAGATCCTGATAAGATCCTAAAATGCAGATGTATGAACTGATGGAGCGCTTGCGCGTTAATGCAATGGGCATACAATCAGGTGTTCCATTTCCGGCCATGACCAATAAAAGCCTCGAGCTTGATCTGAAGCAATCAGGAAAAGTTTTGGCATAATATCACCCAATTTAAAGGTGCACTCAGCTCCATAGTGGAGAAAAAACAGGCTTTGAATAACCGAGTTCCACAGCCGCTTTGCTGAACAGGAGTAGGGAGTTTTGGCAAGTTAATGAAAGACAGGATGGACATTAAGAACATGATTTGATAGATCGCTGAGATTTTAGACTGTGCCTGCGACTCCCTGCATGCTTTTTATTGCTAAGAAATGAAGTTTGACTCGCAATCATCTTCCCCGAATAGCCTAGGAAAGAACAAGCGCTTGAAAAGGctaaaagaaaagaggaaaatgatatgtgtgtgtgtgtatatatatatatatatatatatatatatatatatatatatatatattactttaatatATAGTGCCACaattgtgctgtgtgtgtgtgtgtgtgtgtgtgtaaatgtgtaactaAATGCTTTCATTAATACTTAACCAGACGCCCAGCCTTTGTTTGACAGTAGCCTGGCCTGAGATAGAcgggaaaaacaaaaaaagatttgatCTAAAAACATCACCTTCTTTATACATCTGCCTTCctctcaggaaaaaaaaacagcagcaggataAGCGAAACAGTCTTTTCTGTCCGTTTCAAACGAGCCCAGTGATGCGGTAGTCAAGGGCCAACACAGGCCAGGGTGGAATTGTATCAGAATTAAAGGAATATTTAACTTTTATCCTCTATCCTATATCTGCTGAATCATTTTCATACATTGGTTACCACAAATGAGAATTTCAGCATGTTTCTCTGTGTGTAGAGAACaacttggaataaaatatacagcagAACAGTAGAATGGGCTGGTGCTAATACACTCAAACAAACGTTAAAAATGTGCACCCATTTCTCCCGCAACTGTTAGGATTCTCCCGCATACTCATTGATAGAGGAACCTGCCACAATATTAGACGCATGCTCTTGCTCGCAGGGCTTTCTTCACTGCTGTGTTTGTCTTCATATATTAAAGGCTTATTCTAATAACCCAGTGACTTACAGGAAGAAGCAGTGGCGCTAGTTAAACTAGTAAGCAGACTTGCATGTGCTGTTTGTGTTAGCTGTGTTATTTTTGTCCATGTATGCttcctcctcctgttccttcctATCCTCCTTTCCCACTGCATGTCTTCCTCACTGCTAATATACTGAGTTTACTATCTTTTCCTCAGAAATCCTGTCAGAAAGAAGGTTCCTAAGTAGAACACAGAAAacaatatgtgtatgttttaatGTCTAAAGGACAGTAACAGGGCAGTAGGTAACCAAAGAGGGGGGACTTCTGATGaagctgttaaaaaaagaaatagatttatttaaaagatattcaaagctaaataaagtatatacatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatata
>XM_022664313.1
gtgagcgagagaaagacagaaataggAGAGGTAAAGAAAgtagaaatagagaaaaagaaagaaagagaagaggatGAATGGAGAGCAGGATCAGCTGTTAGCGGAGGGAAGTGAGCAAAGGGAGATGCAGCAGCAAGACGGAGAGACGGGCGGTAACAGCTTCTGCCTCGCAGAGGGTAAAAACTTTTGTCCTACTGAGGATAAAAATTTCTGCCCCGCGGAGGACAAGAATTCATGTCTCGCGGAGCAGGGCAGAGCGCGCGCTGAGGAGGCGGAGGGGGGCTACGGCACTTTCACCAGCGCACGGGGGGATGAGGAAGATGATGGGGGTGATGAGAATAAAGCGCGCGGGAACTGGTCCAATAAGATGGATTTCATTCTGTCCATGGTGGGCTACGCGGTGGGCTTGGGGAACGTGTGGAGGTTCCCCTACCTGGCATTTCAGAACGGAGGAGgtgCGTTTTTAATCCCGTACCTGATTATGTTGGGTCTGGCTGGAATCCCCATCTTCCTGCTGGAAGTGTCTTTGGGACAGTTTGCCAGTCAGGGTCCTGTCTCCGTCTGGAAAGCCATTCCTGCCCTGCAAGgtTGCGGGATTGCCATGTTGATTATATCTGTGTTGATAGccatatactataatataatcatGTGCTGGACACTGTACTACCTGTTCGCTTCGTTCACTTCGTTGAAGGATTTTCTGCCCTGGACCTTTTGCAACAATGTCTGGAACACAGTTGAATGCAAAGACCAGCACATGCTGAGACTGGATTCTTGTATAATTCGAGATAGAAACGTCAGCTCAGTTAAAAACACCACGTTTTGTTTGTCCGCAAACGCCGCTGGGAATTTGAGCAGGTTATTAAACATCACAACAGAGAACAGGACCTACGTCAGCCCCAGTGAGGagtacttcaaATATAATGTATTACACATCTCTAAAGGGATTGAATACCCTGGGGATATCCGCTGGCCCCTGGCTGCATGCCTCTTTTTGGCCTGGCTGATAGTCTACGCGTCTTTGGCGAAAGGGATCAAATCTTCAGGCAAGGTAGTGTATTTTACAGCCACTTTCCCATATGTGGTGTTGGTCATCCTGTTAATCCGCGGGGTCACTCTGCCTGGGGCCGGCTCTGGGATCCTGTACTTCATTACACCGAAGTGGGAGAAACTCAACGATGCTAAAGTGTGGAAAGATGCTGCAACTCAGATTTTCTTCTCACTGTCTGCAGCGTGGGGCGGTCTGATAACGCTTTCCTCATATAATAAATTCCATAATAACTGTTACagGGACACCATCATTGTGACGTGTACCAACAGTGCCACCAGCATTTTTGCTGggtttgttattttttcagtCATTGGCTTCATGGCCCACGAACTGAAGGTGCCAATTGAGAGTGTAGCAGATGAAGGGCCTGGTATAGCATTTGTTGTTTACCCTGAAGCCCTCACGAGATTGCCAGTCTCTCCATTTTGGGCCATCATCTTTTTCCTCATGCTCCTCACACTGGGGCTGGATACTATGTTTGCCACCATTGAAACCATAGTGACCTCTGTGTCAGATGAATTCCCTAAATACCTGCGCAAACACAAGCCTATCTTCACCCTGGTGTGCTGTTTATCCTTCTACGTGTTGGGATTCCCTATGATCACCGAGGTTAGAGACACACTTCTTAAATGTTTAAAGGACCAGTTTAGAAAAGACTTTTACgaaCTTTTGATACTGTTGATCATGATCTACATAGGGTCCTTACATATGATTGGTCTGCAGCGGTTTTGTGAGGACATTGAAATGATGATTGGTTTTCAGCCAAACAAGTTCTGGAGGATATGCTGGGCCTTTGTCACTCCTACCATCCTCACATTTATCCTGGCACTGAGTCTGTACCAGTGGCAGGTTATGACCTATGAGGATTACACCTATCCCACCTGGTCGATGGTAATGGGTTGGTTAATGGTCATCTGCTCCGTCATCTGGATCCCCATCATGTTTGTTATCAAAATGTACCTGGCGCCAGGAACTCTGATTGAGCGCCTGAAGCTGGTTTGCTCACCACAGCCTGACTGGGGCCCATTCCTGATGAAGCATCGCGGAGAACGCTACAAGAACATGATGGACCCGCTGGGCACAAACTCACTGGGACTCAAACTACCACCCAAAGAGTTCCATCTTTCCGCCCAGTACCAGTAACCCCACACTAATGAAAAAACAGGTTACATGCCATAACATAATAAATGCTGATGCTGCTTACAATGAATGAACAAAACATCGTCTTTAGAGAAATGATATTGAGCTGACTGGTGGCCTCACACTTCCATTCCtttttagcagcattagcatattAGCTTTATGTGCAGGGTTTAAGACCTTAAATAAAAGGGTAAACTCTCCagtgcaaacaaaacaaaatcgcACTGCAGCTAAAAGAGTGCAGGCTTTGCTATTAAGCATTATCATAAACTCCAACATCTCCCAATGTAGCAGGAAACATTGTTTTTCCTCATTACTTTCCCCATACTTCCaacctttttttcctctctttgtggtgttattgttttttttcgaGTGGAAAAAACCTCCATCAGTCAGAGGGTGGAGGTCAAATGAGCCACAAGTCTGGACATTTCTTTATAGCTGCAGTATGTGGACATCATGGCAATATCATGAATATGAATTggttaatttgtattatttactatttaactGATGGCACTATTGCTAATGTATGTAGAAGAGCACTAGTCATTTCTGCCTTCGTAATGACCATAAAGTGAGAGAAAACTGCCTTGCAGCTAATCTCTGATTTGCATCCTAAATTTTAGTTGACCTGTCCGGGCTCCACCCACTAATGTGCCTTTGGTAGAAAAACGATTGTGAGATTGGACAACAGTGTTGATGAGAGACTGTCGCTCCACCAGTTGAATGAGTTTGTCATCAGTATCTTTTGAATTTGTTAACATTAGTGTGCTGAACCTGGAGGGGTCACTGTTTGCTCTTTACCTGTATCTCCTAACAGTATATCCTGCACTCTGTGCCTCTGATTCAGTGTAGTATTGTGTAGTATAGCGCTAACCTAAACCTTTATATTCCTGCTGTACAGGAAGCGCATATCTCTCTGTAATCTAGGAGCTGTTCTACGTGAAAGAGCTTCACTTTCAACTCAATGACATAATCTCATTGATAACCCACTTAGTTTAGAAGCACAAGCTTCAGGATATAGGACGGTAGAGTAGATCCATTTCTCTCCTTTTTGATTAAAGGGCATAAAAATGAAGCCATGGAAAAGTTTAAATGTTACCTTTATGTCTTTAAGATGCTACTCTGCAACCAGCTTGTGTAAAAAACTTGCGTAAAGAACTAAGAGTGCTAAGAGCTTTCCACTATGTGTTGTGATCCTTTTAAATGGTTCCCTTAACTGTTTTTCTTGTGTGCAGACTACAGTAGGGCACAATGGTGgaaagtatataaaatatctaTGTGTATTTGTATACCGAGAGACgtgtgtgtagaatgtgtgtCTTGTTCACTGTGAGGCTGTTCCATTAGttctgtaatcatttacagaGAACCTGTGAGTAGTTTATTAGTGTTGTTCACTCCATACAATGTCTTAATCCGTCTCTGTAGCTTTGTAGGttagagaagaaaaaacaacTTTCTCCATGAGTTTAATGATGTAAAAGATGTCCAAGGACCATTCCTCTTCTGAAAAGTTATGTCTCGTCTCTTCTCGTTGGTGTCAATCTCATCATGAAACAGGGTCTCAGGTATACTCCTTATTTTCACAGATGTGAAGCGGCTTTAGGGAATCTTggaattgcttttttaaatgtctgtgCTTCAAAGGAGAAACAGCAAGGAAAAGGAAAACATCTCAGAGATTTTTCTCAATGTGACATAACTCTGCTGTCCACTATAATCTTCTCATATGTGAACGGCTGCCGGTTTGGAGGCACTGTGACAGCACTTCCCCTGCTgttccttcttttcttttagGAATACAAACCATATAACTACAAAAGAAGGCTTATAACTGTAAACAGCCTCCTTTAAGTATTCATTAgataaatttgtttaaaattcaGATTTCAGTCCGAGTGTAACCAGTCACATGAAACAGTCAGGTGCAACCAGGGTCTCAGATCCTGATAAGATCCTAAAATGCAGATGTATGAACTGATGGAGCGCTTGCGCGTTAATGCAATGGGCATACAATCAGGTGTTCCATTTCCGGCCATGACCAATAAAAGCCTCGAGCTTGATCTGAAGCAATCAGGAAAAGTTTTGGCATAATATCACCCAATTTAAAGGTGCACTCAGCTCCATAGTGGAGAAAAAACAGGCTTTGAATAACCGAGTTCCACAGCCGCTTTGCTGAACAGGAGTAGGGAGTTTTGGCAAGTTAATGAAAGACAGGATGGACATTAAGAACATGATTTGATAGATCGCTGAGATTTTAGACTGTGCCTGCGACTCCCTGCATGCTTTTTATTGCTAAGAAATGAAGTTTGACTCGCAATCATCTTCCCCGAATAGCCTAGGAAAGAACAA

Function

symbol description
slc6a5 Predicted to enable glycine:sodium symporter activity. Predicted to be involved in glycine import across plasma membrane; glycinergic synaptic transmission; and sodium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in central nervous system and glycinergic neurons. Human ortholog(s) of this gene implicated in hyperekplexia 3. Orthologous to human SLC6A5 (solute carrier family 6 member 5).

NR:

description
sodium- and chloride-dependent glycine transporter 2

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005328 neurotransmitter molecular_function

KEGG:

id description
K05038 SLC6A5_9, GLYT; solute carrier family 6 (neurotransmitter transporter, glycine) member 5/9

RNA

RNA id representative length rna type GC content exon number start site end site
TU393141 False 3994 TUCP 0.39 4 66798 74634
XM_022664313.1 True 4555 mRNA 0.44 16 28779 73413

Neighbor

gene id symbol gene type direction distance location
LOC111190604 NA coding upstream 7525 1043 ~ 21254 (+)
G286116 NA non-coding upstream 4257 24309 ~ 24522 (+)
G286129 NA non-coding downstream 30390 105024 ~ 107433 (+)
G286144 NA non-coding downstream 37704 112338 ~ 112752 (+)

Expression


Co-expression Network